Table 1.

Microarray experimental design

Condition	Organism	Mediuma	OD600	Supplement	Supplement concn	Data type
						Array	qRT-PCR	RNA-seq
1	24377Ab	LB	0.5	None	N/Ac	X	X	X
2	24377A	LB	0.5	Glucose	0.4% (wt/vol)	X	X
3	24377A	LB	0.5	Bile	3% (wt/vol)	X	X	X
4	24377A	LB	0.2	Bile	3% (wt/vol)	X	X
5	24377A	LB	0.2	None	N/A	X	X
6	24377A	LB	0.8	Bile	3% (wt/vol)	X	X
7	24377A	LB	0.8	None	N/A		X
8	24377A	DMEM-HI	0.5	None	N/A	X	X
9	24377A	DMEM-LO	0.5	None	N/A	X	X
10	24377A	DMEM-HI	0.5	2348 PCM	10% (vol/vol)	X	X
11	24377A	DMEM-HI	0.5	HS PCM	10% (vol/vol)	X	X
12	24377A	DMEM-HI	0.5	S. boydii PCM	10% (vol/vol)	X	X
13	24377A	DMEM-HI	0.5	HS PCM	1% (vol/vol)	X	X
14	H10407d	LB	0.5	None	N/A		X
15	H10407	LB	0.5	Bile	3% (wt/vol)		X
16	H10407	LB	0.5	Glucose	0.4% (wt/vol)		X

^aDMEM-HI, DMEM-high glucose; DMEM-LO, low glucose.

^bRasko et al., 2008 (35).

^cN/A, not applicable.

^dCrossman et al., 2010 (6).