Table 5.
Differential expression of nonannotated transcripts by RNA-seq analysis
| pETEC_74 location (chromosome nucleotide no.)a |
Countb |
Fold change (log2) | P valuec | Annotationd | ||
|---|---|---|---|---|---|---|
| Start | End | LB | Bile | |||
| 11572 | 11674 | 1 | 12,150 | 13.2 | 0.0000 | Hypothetical protein |
| 898175 | 898323 | 1 | 3,379 | 12.4 | 0.0000 | intergenic region |
| 1708879 | 1709036 | 1 | 683 | 9.1 | 0.0025 | Intergenic region |
| 1867008 | 1867176 | 8 | 1,376 | 7.5 | 0.0050 | Intergenic region |
| 2979643 | 2979873 | 154 | 17,582 | 6.8 | 0.0071 | Intergenic region |
| 4008052 | 4008248 | 11 | 1,239 | 6.8 | 0.0094 | Intergenic region |
| 1925715 | 1925840 | 49 | 4,268 | 6.4 | 0.0094 | Hypothetical protein |
| 4265429 | 4265561 | 1,375 | 95,084 | 6.1 | 0.0759 | Hypothetical protein |
a
E24377A isolate.
b
Results represent normalization with DESeq.
c
Results represent Benjamini Hochberg correction.
d
Based on best BLAST hit against the KEGG Genes database.