Table 2.
Oligonucleotides used in this study
| Name | Sequence (5′–3′) |
|---|---|
| ORF573FW | ATAACCGAGCCGTACCAATG |
| ORF573RV | CATTTTGGCAGAGCATTTCA |
| ORF516FW | ACCCAGATTTGACACTGCCAG |
| ORF516RV | AAGGTCGTGCCTGAACCGT |
| ORF323FW | TTAGAAAACGCAAGGCGTGAG |
| ORF323RV | CCCCATGATTGCCTGCTTT |
| ORF165FW | GCACACAGCCACCAAATC |
| ORF165RV | GTCGGAGAATGGTCGGA |
| ORF1411FW | CGACATATCAGCTATGTGCCTC |
| ORF1411RV | TGGCCTGTCTGAGCAAATC |
| ORF1413FW | ACGCCACTGCGTGAAGAG |
| ORF1413RV | TGCGCTGATTAAGTCATATGC |
| ORF1573FW | AGAGGTGTTGCCTGAGGTGAA |
| ORF1573RV | CTGATGCTGAGGCAATGACTG |
| ORF222FW | AGAAGCTTTGTGAAAGGCGG |
| ORF222RV | TTTCGTTGCTGGACACGGT |
| ORF734FW | TTCGCCCCAAAACGATACTTG |
| ORF734RV | CGGCAGTCTGAATGGCTGATT |
| ORF990FW | GCACAAACTGTCGGTGAGGAA |
| ORF990RV | TGCCATTCTGCACCATAGCCT |
| ORF184FW | CGTCAAACCAACCAAACAACG |
| ORF184RV | ATCAACGCCAGCATCAGCA |
| ORF903FW | TGCCTTATTGGATTTGGCTGT |
| ORF903RV | GGCGTTTGGCAATGTCTGA |
| ORF1550FW | GCAGGCTTGTCTCGCATTG |
| ORF1550RV | CCTTCCATTGCTTCTACTTGCTCT |
| ORF681FW | GCCAAAAAGCAGCACGGTA |
| ORF681RV | GTTCTTGTGAGGCAGCATTATCTG |
| ORF763FW | TTACAGGCATGATGGGCGT |
| ORF763RV | ACTGTTCGGCAGGCGATTT |
| ORF1131FW | CCAAGTGTTGTGACAGAACCAGTT |
| ORF1131RV | CGGGCAGTTGGTGTTTTGAC |
| ORF1031FW | GTTGCTTATGATGAGATTAGC |
| ORF1031RV | GACAGTACGATAGCCATTGGT |
| ORF622FW | AAGATGAACTTAAACGCTACTTGCG |
| ORF622RV | AGAAATGGTCAAGCAGGACAGG |
| ORF1300FW | AAAACGCCATCGCAGCA |
| ORF1300RV | GTTTGAACCTGCAAGGTCAGC |
| ORF1686FW | GTGCGTTTCATGATTCAATTA |
| ORF1686RV | ATCCACCACGCCAGTCAA |
| ORF1405FW | TACCCCATTTTATGCCAAGG |
| ORF1405RV | CCTGCTAGGCTGGTTTTGTC |
| ORF1432FW | GCTAAGCGTAACCGTGGACTAAA |
| ORF1432RV | ATGCACGCTCAACGCCA |
| ORF275FW | AGGCGGTTAGTAATCCAGCAG |
| ORF275RV | TGGTTTGCATGCTAATGATGATA |
| ORF987FW | CCTATTGTGGGCGATGCCT |
| ORF987RV | GCGGTCGTTGTTCAAAGTCA |
| ORF897FW | ACAAGTGGGCGTGGATAAAGA |
| ORF897RV | AGTTGGTCTGACCTGCGGC |
| ORF1367FW | AGCAGGTGACACAATCATTCC |
| ORF1367RV | AACTGTTTCTACTTTACCATCCTTTG |
| ORF1045FW | TGTCGATGCTCAAGCAACTT |
| ORF1045RV | GCCTTCTTTGATGCCTGAAC |
| Pr930 | TATTGCCAAAATCCGTTG |
| Pr947 | AAAACGCATCTTGACGCTG |
| P1 | AGCTTTGAGCATGTGCCTC |
| P2 | AATCATGCAAATGATACGCCCA |
| P3 | TTATTCCTCCTAGTTAGTCACCCGGGTAGCTTCAATGTCATACAATCGTAC |
| P4 | TGTTTTAGTACCTGGAGGGAATAGTACGCCGTGCTCGT |
| PFkn3 | CGGGTGACTAACTAGGAGGAATAA |
| PR2kn3 | TATTCCCTCCAGGTACTAAAACA |
| 1550-F | AAGAAGAGCATGCCCACATTG |
| 1550-R | CCCGAATCATTAATACGGCG |
| Hyp-F | CGCATCAGTCAAACATCCAA |
| Hyp-R | TGGATTAATCAAACCCAGCTT |
| 1549-F | ATGATGCCTCTTTGGCAACT |
| 1549-R | TGGTAATTTTGGCGTGTGTG |
| 1550 FRT | GAAACCATTCAGCGTGAAGAGCT |
| HYP RRT | GGATTAATCAAACCCAGCTTTTCAGTATTGA |
| HYP FRT | CAGGGCAATGCTCTGGC |
| 1549 RRT | CAAGATGTTCTTCAGTTAAGGTGATGGG |