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. 2012 Mar;194(5):982–992. doi: 10.1128/JB.06396-11

Fig 2.

Fig 2

Phylogenetic relationships among Usps of E. coli and B. glumae and conserved ATP-binding motifs. (A) Classification of 11 Usps of B. glumae (Pfam accession number PF00582) based on domain organization. CD denotes a conserved domain of unknown function. (B) Conservation of the putative ATP-binding motif of the MJ0577 (Methanocaldococcus jannaschii DSM 2661) Usp in the B. glumae Usps. The corresponding region of UspA in E. coli is shown for comparison. Conserved amino acid residues are in red. (C) Phylogenetic relationships among Usps of B. glumae using amino acid sequences. (D) Similarities of Usps in B. glumae and E. coli at the amino acid level. The phylogenetic tree calculation was performed by using the CLC Main Workbench 5.6 program, based on a sequence distance method that utilizes the neighbor-joining algorithm. Values at branches indicate the percent bootstrap support for 100 replicates.