Table 1.
Species | Target gene | Fragment size (bp)a | Outer primerb |
Inner primer |
Reference | ||
---|---|---|---|---|---|---|---|
Name | Sequence (5′–3′) | Name | Sequence (5′–3′) | ||||
“Ca. Neoehrlichia mikurensis” | 16S rRNA | 488* | EC9 | TAC CTT GTT ACG ACT T | IS58-62f | GGA ATA GCT GTT AGA AAT GAC A | 7 |
EC12A | TGA TCC TGG CTC AGA ACG AAC | IS58-594r | CTA TCC TCT CTC GAT CTC TAG TTT | ||||
groESL | 315* | gro607F1 | GAA GAT GCT GTD GGA TGT ACT GC | gro667F2 | ATT ACT CAG AGT GCT TCT CAG TG | 20 | |
gro1294R1 | AGT GCT TCA CCT TCT ACA TCT TC | gro1121R2 | TGC ATR CCR TCA GTT TTT TCA AC | ||||
A. phagocytophilum | p44 | 334 | MSP3F | CCA GCG TTT AGC AAG ATA AGA G | 26 | ||
MSP3R | GCC CAG TAA CAA CAT CAT AAG C | ||||||
Borrelia sp. | 16S rRNA | 659* | 16S1A | CTA ACG CTG GCA GTG CGT CTT AAG C | 16S2A | AGT CAA ACG GGA TGT AGC AAT ACA | 15 |
16S1B | AGC GTC AGT CTT GAC CCA GAA GTT C | 16S2B | GGT ATT CTT TCT GAT ATC AAC AG |
*, The product size was obtained using the inner primers.
Boldface letters indicate modifications of the published primer.