Table 2.
Top 30 list of ≥ 2 fold downregulated genes in spf deletion mutant after addition of 44.4 mM glucose
| CDS | Gene | Gene product | Log2 ratio | Adjusted P-value |
|---|---|---|---|---|
| VSAL_II0612 | HTH-type transcriptional regulator, LysR family (pseudogene) | -5.71 | 1.24E-04 | |
| VSAL_I0768 | hypothetical protein, putative phage gene | -5.62 | 1.24E-04 | |
| VSAL_I3103s | VSsrna23 small RNA Spot 42 | -5.60 | 1.24E-03 | |
| VSAL_I3178s | VSsrna149 tmRNA | -5.19 | 1.24E-04 | |
| VSAL_I1028 | gpN major capsid protein | -5.17 | 1.46E-04 | |
| VSAL_p320_13 | putative peptidase, S24-like | -5.16 | 2.49E-04 | |
| VSAL_II2002s | VSAsrna3 undefined small RNA | -5.12 | 1.46E-04 | |
| VSAL_I0985 | MrdA penicillin-binding protein 2 | -5.06 | 2.49E-04 | |
| VSAL_I1029 | gpM phage terminase, endonuclease subunit | -5.02 | 1.24E-04 | |
| VSAL_I4069s | VSsrna70 undefined small RNA | -4.72 | 4.98E-04 | |
| VSAL_I0136 | IucC siderophore biosynthesis protein | -4.42 | 1.97E-04 | |
| VSAL_I4155s | VSsrna156 undefined small RNA | -4.20 | 6.14E-04 | |
| VSAL_I1027 | gpO phage capsid scaffolding protein | -4.10 | 3.71E-04 | |
| VSAL_I3104s | VSsrna24 small RNA | -4.10 | 2.97E-04 | |
| VSAL_I0135 | AlcA siderophore biosynthetis protein | -4.04 | 3.71E-04 | |
| VSAL_p54_02 | putative mobilization protein | -3.93 | 3.71E-04 | |
| VSAL_p43_01 | replication initiation protein | -3.92 | 1.24E-04 | |
| VSAL_I0134 | L-2,4-diaminobutyrate decarboxylase | -3.84 | 2.49E-04 | |
| VSAL_I3073r | 5S rRNA 5S rRNA undefined product 93740:93859 forward | -3.82 | 7.53E-04 | |
| VSAL_I1039 | probable exported protein, putative phage gene | -3.72 | 2.49E-04 | |
| VSAL_I3157t | tRNA transfer RNA-Ser | -3.64 | 3.13E-04 | |
| VSAL_I0137 | TonB-dependent iron-siderophore receptor precursor | -3.58 | 3.08E-04 | |
| VSAL_p54_01 | acyltransferase | -3.58 | 4.98E-04 | |
| VSAL_I1751 | TonB1 TonB protein (pseudogene) | -3.56 | 3.71E-04 | |
| VSAL_I3144t | tRNA tRNA transfer RNA-Leu 842679:842760 reverse | -3.46 | 8.25E-04 | |
| VSAL_I3072r | 23S rRNA 23S rRNA undefined product 90756:93646 forward | -3.37 | 1.04E-03 | |
| VSAL_I1040 | hypothetical protein, putative phage gene | -3.33 | 3.13E-04 | |
| VSAL_p320_31 | putative phage intergrase | -3.32 | 3.71E-04 | |
| VSAL_p43_02 | acetyltransferase | -3.25 | 1.97E-04 | |
| VSAL_I3102s | VSsrna22 small RNA RyhB | -3.23 | 3.08E-04 |