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. 2012 Feb 6;13:61. doi: 10.1186/1471-2164-13-61

Table 1.

Copy number of HSP::TRANSPOSASE in the single transgenic lines, and genomic insertion locus (scaffold and position) with score, e-value and, if applicable, annotated transcript.

Transgenic line Copy number Genomic insertion locus (scaffold:position)* Score E- value Transcript
N66-2 1 3:16,990,223 1132.0 0 POPTR_0003s17690 (no functional annotation)

N66-5 1 3:15,414,346 1222.2 0 POPTR_0003s15650 CTP synthase (UTP-ammonia lyase)

*based on BLAST-results against the genome sequence of P. trichocarpa v2.0 (Phytozome v7.0; http://www.phytozome.net/poplar). Successful positioning of blasted sequence on the physical map of P. trichocarpa was assigned to the Populus-aspen genome because of the high collinearity between the P. trichocarpa and P. tremula/P. tremuloides genomes [49].