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. 2011 Dec 28;11:528. doi: 10.1186/1471-2407-11-528

Table 2.

Genes regulated by TEL-PDGFRB.

A. Microarray Analysis
Genes Regulated by TEL-PDGFRB

Fold-Change Gene Name

Induced Genes 234.50 Chemokine (C-X-C motif) ligand 10 (Cxcl10)

103.12 Guanylate nucleotide binding protein 1 (Gbp1)

64.00 Immune responsive gene 1 (Irg1)

42.22 Ubiquitin specific protease 18 (Usp18)

19.00 Signal transducer & activator of transcription 1 (Stat1)

14.55 Interferon regulatory factor 7 (Irf7)

7.46 Leukemia inhibitory factor (Lif)

6.96 Jun oncogene (Jun)

5.84 Vascular endothelial growth factor A (Vegfa)

Suppressed Genes 2.83 Gelsolin (Gsn)

2.64 Elk3, member of Ets oncogene family (Elk3)

2.64 Cyclin I (Ccni)

2.64 Cyclin-dependent kinase inhibitor 2c (Cdkn2c)

2.46 Leukotriene A4 hydrolase (Lta4h)

2.46 Adducin 1, alpha (Add1)

2.46 Neutrophilic granule protein (Ngp)

2.46 Eukaryotic elongation factor-2 kinase (Eef2k)

2.46 EGF-like module containing, mucin-like, hormone receptor-like sequence 1 (Emr1)

B. Validation by Quantitative PCR

Gene Name Mean Fold-Change p-Value

Cxcl10 61.55 ± 20.98 0.02

Stat1 2.70 ± 0.45 0.009

Gbp1 83.47 ± 20.89 0.008

(A) Selected genes that were induced or suppressed by TEL-PDGFRB by two-fold or more after 1 week of activation. Genes chosen for validation by Q-PCR are denoted by asterisk. (B) Q-PCR was performed in triplicate using RNA samples extracted from 4-5 distinct cell populations. Mean fold-induction at 1 week compared to the expression at 0 h, and SEM are shown for each gene. A student t-test was performed to obtain p-values for the difference between the mean gene expression level at 0 h and 1 week