Table 2.
A. Microarray Analysis | ||
---|---|---|
Genes Regulated by TEL-PDGFRB | ||
Fold-Change | Gene Name | |
Induced Genes | 234.50 | Chemokine (C-X-C motif) ligand 10 (Cxcl10) |
103.12 | Guanylate nucleotide binding protein 1 (Gbp1) | |
64.00 | Immune responsive gene 1 (Irg1) | |
42.22 | Ubiquitin specific protease 18 (Usp18) | |
19.00 | Signal transducer & activator of transcription 1 (Stat1) | |
14.55 | Interferon regulatory factor 7 (Irf7) | |
7.46 | Leukemia inhibitory factor (Lif) | |
6.96 | Jun oncogene (Jun) | |
5.84 | Vascular endothelial growth factor A (Vegfa) | |
Suppressed Genes | 2.83 | Gelsolin (Gsn) |
2.64 | Elk3, member of Ets oncogene family (Elk3) | |
2.64 | Cyclin I (Ccni) | |
2.64 | Cyclin-dependent kinase inhibitor 2c (Cdkn2c) | |
2.46 | Leukotriene A4 hydrolase (Lta4h) | |
2.46 | Adducin 1, alpha (Add1) | |
2.46 | Neutrophilic granule protein (Ngp) | |
2.46 | Eukaryotic elongation factor-2 kinase (Eef2k) | |
2.46 | EGF-like module containing, mucin-like, hormone receptor-like sequence 1 (Emr1) | |
B. Validation by Quantitative PCR | ||
Gene Name | Mean Fold-Change | p-Value |
Cxcl10 | 61.55 ± 20.98 | 0.02 |
Stat1 | 2.70 ± 0.45 | 0.009 |
Gbp1 | 83.47 ± 20.89 | 0.008 |
(A) Selected genes that were induced or suppressed by TEL-PDGFRB by two-fold or more after 1 week of activation. Genes chosen for validation by Q-PCR are denoted by asterisk. (B) Q-PCR was performed in triplicate using RNA samples extracted from 4-5 distinct cell populations. Mean fold-induction at 1 week compared to the expression at 0 h, and SEM are shown for each gene. A student t-test was performed to obtain p-values for the difference between the mean gene expression level at 0 h and 1 week