Table 1 . Proportion of replications (%) that rejected neutrality.
| Duplicated region |
Flaking region |
||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Before fixation p |
After fixation t1 |
Before fixation1
p |
After fixation t1 |
||||||||||||||||||
| c/μ | Ns | 0.25 | 0.5 | 0.75 | 0.9 | 0 | N | 2N | 4N | 0.25 | 0.5 | 0.75 | 0.9 | 0 | N | 2N | 4N | ||||
| 0 | 1 | 5.2 | 5.0 | 5.2 | 5.1 | 4.6 | 5.0 | 5.3 | 4.6 | 5.3 | (5.3) | 5.1 | (5.3) | 5.6 | (6.3) | 5.2 | (5.3) | 4.9 | 4.5 | 4.7 | 4.8 |
| 0 | 10 | 12.5 | 23.0 | 30.2 | 28.4 | 23.5 | 10.0 | 7.5 | 5.1 | 12.9 | (7.3) | 17.7 | (10.8) | 19.7 | (16.5) | 17.9 | (17.9) | 15.9 | 8.4 | 6.0 | 5.0 |
| 0 | 100 | 67.3 | 97.5 | 99.9 | 100.0 | 100.0 | 45.3 | 19.0 | 9.8 | 61.3 | (10.1) | 79.9 | (23.3) | 86.8 | (55.8) | 87.2 | (80.4) | 85.8 | 50.5 | 22.9 | 7.7 |
| 100 | 1 | 0.9 | 0.4 | 0.2 | 0.2 | 0.1 | 0.0 | 0.0 | 0.0 | 5.0 | (5.2) | 4.7 | (5.2) | 5.4 | (5.6) | 5.1 | (5.4) | 5.2 | 4.7 | 4.8 | 4.9 |
| 100 | 10 | 3.5 | 3.8 | 3.9 | 2.7 | 1.4 | 0.1 | 0.1 | 0.1 | 13.2 | (7.3) | 18.0 | (11.0) | 18.8 | (15.8) | 17.0 | (17.2) | 15.7 | 7.9 | 6.2 | 4.9 |
| 100 | 100 | 49.9 | 83.5 | 94.5 | 96.4 | 92.3 | 7.2 | 2.2 | 0.5 | 61.7 | (10.6) | 80.5 | (23.5) | 86.3 | (55.8) | 86.7 | (80.2) | 85.4 | 50.4 | 22.3 | 7.8 |
n = 100 and θ = R = 0.01 were assumed in the entire simulations. For the simulations with active gene conversion, we assumed C = 1 or c/μ = 100 with the average tract length ℓ = 100.
1The results when all chromosomes are presented in parentheses. See text for details.