Table 3.
cDNAs selected from all 3 reverse SHH libraries.
| Gene name | Gene Symbol | E-value | Genebank No. | Number of genes |
|---|---|---|---|---|
| 3 h | 35 | |||
| ferritin | FTL | 0.00E+00 | NM_000146 | 1 |
| phosphoglycerate kinase 1 | PGK1 | 0.00E+00 | NM_000291 | 1 |
| SMT3 suppressor of mif two 3 homolog 2 | SUMO2 | 5.00E-115 | NM_001005849 | 1 |
| ribosomal protein S14 | RPS14 | 2.00E-52 | NM_001025071 | 1 |
| ATPase | ATP6V0B | 1.00E-47 | NM_001039457 | 1 |
| tubulin, beta 2A | TUBB2A | 2.00E-27 | NM_001069 | 1 |
| actin, beta | ACTB | 0.00E+00 | NM_001101 | 1 |
| yippee-like 5 | YPEL5 | 3.00E-47 | NM_001127401 | 1 |
| translation elongation factor | EEF1A1 | 0.00E+00 | NM_001402 | 1 |
| early growth response 1 | EGR1 | 0.00E+00 | NM_001964 | 1 |
| glyceraldehyde-3-phosphate dehydrogenase | GAPDH | 0.00E+00 | NM_002046 | 1 |
| proteasome 26S subunit, ATPase, 5 | PSMC5 | 0.00E+00 | NM_002805 | 1 |
| signal sequence receptor, alpha | SSR1 | 1.00E-130 | NM_003144 | 1 |
| protein disulfide isomerase family A, member 6 | PDIA6 | 0.00E+00 | NM_005742 | 1 |
| malate dehydrogenase | MDH1 | 0.00E+00 | NM_005917 | 2* |
| ubiquinol-cytochrome c reductase | UQCRH | 0.00E+00 | NM_006004 | 1 |
| translocase of inner mitochondrial membrane | TIMM17A | 0.00E+00 | NM_006335 | 1 |
| heat shock 70 kDa protein 8 | HSPA8 | 0.00E+00 | NM_006597 | 2* |
| peroxiredoxin 3 | PRDX3 | 0.00E+00 | NM_006793 | 1 |
| Sec61 beta subunit | SEC61B | 0.00E+00 | NM_006808 | 1 |
| CD24 molecule | CD24 | 0.00E+00 | NM_013230 | 1 |
| striatin, calmodulin binding protein 3 | STRN3 | 0.00E+00 | NM_014574 | 1 |
| nucleolar protein 11 | NOL11 | 6.00E-158 | NM_015462 | 1 |
| cleavage and polyadenylation factor subunit | PCF11 | 0.00E+00 | NM_015885 | 1 |
| zinc finger, CCHC domain | ZCCHC17 | 3.00E-138 | NM_016505 | 1 |
| homolog 2, suppressor of mek1 | SMEK2 | 0.00E+00 | NM_020463 | 1 |
| 5-azacytidine induced 2 | AZI2 | 2.00E-161 | NM_022461 | 1 |
| anaphase promoting complex subunit 13 | ANAPC13 | 2.00E-94 | NR_024401 | 1 |
| cytochrome c oxidase subunit II | MT-CO2 | 4.00E-150 | XR_078889 | 1 |
| NADH dehydrogenase subunit 4 | MT-ND4 | 7.00E-54 | ADG46850 | 1 |
| Unknown genes | 3 | |||
| 24 h | 44 | |||
| cholinergic receptor, nicotinic, alpha 3 | CHRNA3 | 0.00E+00 | NM_000743 | 1 |
| ribosomal protein L3 | RPL3 | 0.00E+00 | NM_000967 | 1 |
| ribosomal protein S6 | RPS6 | 0.00E+00 | NM_001010 | 1 |
| actin, beta | ACTB | 0.00E+00 | NM_001101 | 1 |
| casein kinase 2 | CSNK2B | 4.00E-176 | NM_001320 | 1 |
| eukaryotic translation elongation factor 1 alpha 1 | EEF1A1 | 0.00E+00 | NM_001402 | 1 |
| calmodulin 2 | CALM2 | 0.00E+00 | NM_001743 | 4* |
| septin 7 | SEPT7 | 0.00E+00 | NM_001788 | 1 |
| LIM domain only 1 (rhombotin 1) | LMO1 | 0.00E+00 | NM_002315 | 1 |
| proteasome beta type, 6 | PSMB6 | 0.00E+00 | NM_002798 | 1 |
| signal recognition particle 9 kDa | SRP9 | 0.00E+00 | NM_003133 | 1 |
| translocated promoter region | TPR | 0.00E+00 | NM_003292 | 1 |
| regulator of G-protein signaling 5 | RGS5 | 0.00E+00 | NM_003617 | 1 |
| NADH dehydrogenase Fe-S protein 2 | NDUFS2 | 0.00E+00 | NM_004550 | 1 |
| myeloid/lymphoid or mixed-lineage leukemia | MLLT11 | 4.00E-143 | NM_006818 | 1 |
| stathmin-like 2 | STMN2 | 0.00E+00 | NM_007029 | 1 |
| component of oligomeric golgi complex 4 | COG4 | 0.00E+00 | NM_015386 | 1 |
| RNA-binding region containing 3 | RNPC3 | 0.00E+00 | NM_017619 | 1 |
| zinc finger, matrin type 5 | ZMAT5 | 0.00E+00 | NM_019103 | 1 |
| synaptotagmin IV | SYT4 | 0.00E+00 | NM_020783 | 2* |
| non-metastatic cells 1, protein NM23A | NM23A | 0.00E+00 | NM_198175 | 1 |
| cytochrome c oxidase subunit III | MT-CO3 | 0.00E+00 | XM_002342023 | 4* |
| ATP synthase F0 subunit 6 | MT-ATP6 | 0.00E+00 | XM_002345305 | 4* |
| cytochrome c oxidase subunit II | MT-CO2 | 5.00E-149 | XR_078889 | 7* |
| NADH dehydrogenase subunit 4 | MT-ND4 | 0.00E+00 | XR_078993 | 1 |
| Unknown genes | 2 | |||
| 48 h | 54 | |||
| glutathione S-transferase | GSTP1 | 0.00E+00 | NM_000852 | 1 |
| neuropeptide Y | NPY | 0.00E+00 | NM_000905 | 1 |
| ribosomal protein L3 | RPL3 | 8.00E-120 | NM_000967 | 2* |
| ribosomal protein L4 | RPL4 | 0.00E+00 | NM_000968 | 1 |
| ribosomal protein L27a | RPL27A | 0.00E+00 | NM_000990 | 1 |
| ribosomal protein L31 | RPL31 | 1.00E-175 | NM_000993 | 1 |
| ribosomal protein S4 | RPS4X | 0.00E+00 | NM_001007 | 1 |
| chromosome 5 open reading frame 13 | C5orf13 | 3.00E-85 | NM_001142478 | 1 |
| adenylate kinase 2 | AKA2 | 7.00E-127 | NM_001625 | 1 |
| calmodulin 2 | CALM2 | 0.00E+00 | NM_001743 | 4* |
| translation initiation factor 4E | EIF4E | 0.00E+00 | NM_001968 | 1 |
| lactate dehydrogenase B | LDHB | 0.00E+00 | NM_002300 | 1 |
| NADH dehydrogenase (ubiquinone) 1 | NDUFC1 | 2.00E-100 | NM_002494 | 1 |
| signal recognition particle 9 kDa | SRP9 | 0.00E+00 | NM_003133 | 2* |
| regulator of G-protein signaling 5 | RGS5 | 2.00E-68 | NM_003617 | 4* |
| DNAJC25-GNG10 readthrough transcript | DNAJC25-GNG10 | 2.00E-166 | NM_004125 | 1 |
| guanine nucleotide binding protein | G protein | 0.00E+00 | NM_004126 | 1 |
| sperm associated antigen 7 | SPAG7 | 0.00E+00 | NM_004890 | 1 |
| heat shock protein 90 kDa | HSP90AA1 | 2.00E-166 | NM_005348 | 1 |
| chaperonin containing TCP1, subunit 3 | CCT3 | 0.00E+00 | NM_005998 | 1 |
| ATP synthase | ATP5L | 9.00E-140 | NM_006476 | 1 |
| mortality factor 4 like 1 | MORF4L1 | 5.00E-96 | NM_006791 | 1 |
| myeloid/lymphoid or mixed-lineage leukemia | MLLT11 | 0.00E+00 | NM_006818 | 1 |
| transmembrane emp24-like trafficking protein | TMED10 | 0.00E+00 | NM_006827 | 1 |
| dickkopf homolog 1 | DKK1 | 4.00E-70 | NM_012242 | 1 |
| signal peptidase complex subunit 1 | SPCS1 | 0.00E+00 | NM_014041 | 1 |
| mitochondrial ribosomal protein L42 | MRPL42 | 5.00E-142 | NM_014050 | 1 |
| HIG1 hypoxia inducible domain family | HIGD1A | 0.00E+00 | NM_014056 | 1 |
| signal peptidase complex subunit 2 | SPCS2 | 0.00E+00 | NM_014752 | 1 |
| mitochondrial ribosomal protein S7 | MRPS7 | 4.00E-156 | NM_015971 | 1 |
| splicing factor 3B | SF3B14 | 0.00E+00 | NM_016047 | 1 |
| hematological and neurological expressed 1 | HN1 | 5.00E-168 | NM_016185 | 1 |
| transmembrane protein 9 | TMEM9 | 0.00E+00 | NM_016456 | 1 |
| chromosome 20 open reading frame 3 | APMAP | 0.00E+00 | NM_020531 | 1 |
| synaptotagmin IV | SYT4 | 0.00E+00 | NM_020783 | 1 |
| ribosomal protein L41 | RPL41 | 0.00E+00 | NM_021104 | 1 |
| transmembrane protein 167A | TMEM167A | 0.00E+00 | NM_174909 | 1 |
| tubulin, beta | TUBB | 6.00E-101 | NM_178014 | 1 |
| THAP domain containing 5 | THAP5 | 6.00E-154 | NM_182529 | 1 |
| K(lysine) acetyltransferase 5 | KAT5 | 0.00E+00 | NM_182709 | 1 |
| gonadotropin-releasing hormone | GNRHR2 | 0.00E+00 | NR_002328 | 1 |
| cytochrome c oxidase subunit II | MT-CO2 | 1.00E-151 | XR_078889 | 1 |
| Unknown genes | 4 | |||
*Only one GenBank identity accession number and the highest Blastp E-value were given here because of the table capacity limitation.