BSP |
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Forward: 5'-AAGAAAAGAAAAGAAAAGAAAATTTAG-3' |
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Reverse: 5'-TTTAGTGAGGTAGATAATTTTTT-3' |
PCR conditions |
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Initial denaturation at 95°C (10 min) and 35 cycles at 95°C (3 s), 52°C (3 s), 72°C (5 s), and a final extension at 72°C (10 s) |
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MSP |
Methylation- |
Forward: 5'-TAGATAATTTTTTTTAGATTTTGCGGTCG-3' |
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Specific |
Reverse: 5'-TCCTCGCGAAACTACGC-3' |
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PCR condition |
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Initial denaturation at 95°C (10 min) and annealing temperature decrement of 0.5°C every cycle (from 70°C to 66.5°C) followed by 32 cycles of 66°C (3 s), 72°C (5 s), and a final extension at 72°C (10 s) |
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MSP |
Non-methylation |
Forward: 5'-TAGATAATTTTTTTTAGATTTTGTGGTTG-3' |
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-specific |
Reverse: 5'-TCCTCACAAAACTACAC-3' |
PCR condition |
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Initial denaturation at 95°C (10 min) and annealing temperature decrement of 0.5°C every cycle (from 64°C to 60.5°C) followed by 32 cycles of 60°C(3 s), 72°C (5 s), and a final extension at 72°C (10 s) |