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. 2012 Mar 7;7(3):e32539. doi: 10.1371/journal.pone.0032539

Figure 2. Phylogenetic analysis of all viral inoculum and transmitted pairs.

Figure 2

C2-V5 of env nucleotide sequences of the inoculum and transmitted HIV-1 species were aligned for all linked inoculum variants (green lines) and transmitted variants (red lines) and a neighbor-joining tree representing different transmission pairs. Branch lengths are drawn to scale. Viral strain names are shown on the branches, and asterisks are indicated on branches with bootstrap values greater than 99%.