Table 1.
Marker no. | RS number | Location | Major allele (allele 1) | Minor allele | No. of informative families* | Z statistic (allele 1) | p value |
---|---|---|---|---|---|---|---|
1 | rs28386840 | Upstream promoter | A | T | 147 | 0.71 | 0.48 |
2 | rs4783899 | 5′flanking | G | T | 183 | −1.69 | 0.09 |
3 | rs1362621 | 5′flanking | A | G | 148 | 1.13 | 0.26 |
4 | rs2397771 | 5′flanking | G | C | 173 | 1.85 | 0.06 |
5 | rs168924 | 5′flanking | T | C | 106 | 0.41 | 0.68 |
6 | rs2242446 | 5′flanking | T | C | 152 | 0.95 | 0.34 |
7 | rs3785143 | Intron 1 | C | T | 76 | 2.25 | 0.024 |
8 | rs192303 | Intron 1 | G | C | 156 | 1.11 | 0.27 |
9 | rs41154 | Intron 1 | A | G | 169 | −1.76 | 0.08 |
10 | rs187715 | Intron 2 | A | G | 41 | 0.61 | 0.54 |
11 | rs36024 | Intron 3 | C | T | 166 | 1.33 | 0.18 |
12 | rs187714 | Intron 3 | T | C | 173 | −1.55 | 0.12 |
13 | rs36023 | Intron 3 | C | T | 170 | 0.58 | 0.56 |
14 | rs36021 | Intron 3 | T | A | 163 | 2.64 | 0.008 |
15 | rs3785152 | Intron 3 | C | T | 73 | 1.46 | 0.14 |
16 | rs1814269 | Intron 3 | G | A | 162 | −1.66 | 0.10 |
17 | rs36017 | Intron 3 | C | G | 166 | −1.53 | 0.13 |
18 | rs10521329 | Intron 4 | C | A | 116 | 0.00 | > 0.99 |
19 | rs3785155 | Intron 4 | G | A | 94 | 0.03 | 0.98 |
20 | rs5564 | Intron 5 | T | C | 46 | 1.27 | 0.20 |
21 | rs11568324 | Intron 5 | C | T | 11 | 0.58 | 0.56 |
22 | rs2279805 | Intron 6 | T | C | 170 | −1.43 | 0.15 |
23 | rs8047672 | Intron 8 | G | A | 119 | −0.08 | 0.94 |
24 | rs5569 | Exon 9 | C | T | 153 | 1.72 | 0.08 |
25 | rs998424 | Intron9 | C | T | 151 | 1.76 | 0.08 |
26 | rs36009 | Intron 10 | G | A | 55 | 0.77 | 0.44 |
27 | rs1800887 | Intron 11 | T | C | 131 | 1.16 | 0.25 |
28 | rs2242447 | Intron 13 | T | C | 160 | 1.15 | 0.25 |
29 | rs15534 | Exon 14 | C | T | 102 | 0.76 | 0.45 |
30 | rs7188230 | 3′intergenic | A | G | 124 | 0.84 | 0.40 |
The number of informative families varies for each tag single-nucleotide polymorphism, depending on the heterozygocity of the marker.