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. 2009 May 18;9(5):3713–3744. doi: 10.3390/s90503713

Figure 6.

Figure 6.

The TaqMan assay, also known as the 5′ nuclease assay utilizes a third oligonucleotide labeled with a fluorophore (green) and quencher (gray), in which the fluorophore is quenched due to FRET conditions. During the reaction, the DNA polymerase (blue) degrades the probe, separating the fluorophore and quencher, allowing for fluorescence emission to occur.