Table 1.
Primers and conditions for DNA methylation analysis.
Sequence ID | Forward primer (5′ to 3′) | Reverse primer (5′ to 3′) | Sequencing primer (5′ to 3′) | Sequence analyzed† |
---|---|---|---|---|
Gene-specific methylation analysis | ||||
iNOS | AATGAGAGTTGTTGGGAAGTGTTT | Biotin-CCACCAAACCCAACCAAACT | TAAAGGTATTTTTGTTTTAA | C/TGATTTTC/TGGGTTTTTTTTTATTTTG |
IL-6 | Biotin-TATTTTAGTTTTGAGAAAGGAGGTG | CAATACTCTAAAACCCAACAAAAAC | TCCTAATACAAACAACCCC | CG/AACCACACG/ACAAAAAC |
Global methylation analysis | ||||
Alu | Biotin-TTTTTATTAAAAATATAAAAATT | CCCAAACTAAAATACAATAA | AATAACTAAAATTACAAAC | G/AC/TG/AC/TG/ACCACCA |
LINE-1 | TTTTGAGTTAGGTGTGGGATATA | Biotin-AAAATCAAAAAATTCCCTTTC | AGTTAGGTGTGGGATATAGT | TTC/TGTGGTGC/TGTC/TG |
Nucleotides at which DNA methylation was measured are underlined.
LINE-1: Long interspersed nucleotide element 1.