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. Author manuscript; available in PMC: 2012 Dec 1.
Published in final edited form as: Epigenomics. 2012 Feb;4(1):91–100. doi: 10.2217/epi.11.106

Table 1.

Primers and conditions for DNA methylation analysis.

Sequence ID Forward primer (5′ to 3′) Reverse primer (5′ to 3′) Sequencing primer (5′ to 3′) Sequence analyzed
Gene-specific methylation analysis
iNOS AATGAGAGTTGTTGGGAAGTGTTT Biotin-CCACCAAACCCAACCAAACT TAAAGGTATTTTTGTTTTAA C/TGATTTTC/TGGGTTTTTTTTTATTTTG
IL-6 Biotin-TATTTTAGTTTTGAGAAAGGAGGTG CAATACTCTAAAACCCAACAAAAAC TCCTAATACAAACAACCCC CG/AACCACACG/ACAAAAAC
Global methylation analysis
Alu Biotin-TTTTTATTAAAAATATAAAAATT CCCAAACTAAAATACAATAA AATAACTAAAATTACAAAC G/AC/TG/AC/TG/ACCACCA
LINE-1 TTTTGAGTTAGGTGTGGGATATA Biotin-AAAATCAAAAAATTCCCTTTC AGTTAGGTGTGGGATATAGT TTC/TGTGGTGC/TGTC/TG

Nucleotides at which DNA methylation was measured are underlined.

LINE-1: Long interspersed nucleotide element 1.