Table 2.
# Reads | # OTUsa | Chao-1b | Shannonc | Simpsond | Simpson evennesse | |
---|---|---|---|---|---|---|
Pig E | 43770 | 582 | 980 | 3.14 | 0.10 | 0.02 |
Pig F | 11386 | 197 | 268 | 3.40 | 0.07 | 0.07 |
Pig G | 16519 | 485 | 820 | 3.73 | 0.05 | 0.04 |
Pig H | 28219 | 730 | 1224 | 3.42 | 0.11 | 0.01 |
Herd 2 Time 1 | 99894 | 1525 | 2513 | 3.58 | 0.06 | 0.01 |
Pig A | 12268 | 128 | 161 | 2.37 | 0.21 | 0.03 |
Pig B | 14885 | 190 | 235 | 3.17 | 0.09 | 0.05 |
Pig C | 9392 | 182 | 237 | 2.81 | 0.14 | 0.04 |
Pig D | 18387 | 135 | 291 | 3.23 | 0.07 | 0.11 |
Herd 1 Time 1 | 54932 | 453 | 628 | 3.23 | 0.07 | 0.03 |
Pig J | 5523 | 122 | 191 | 3.26 | 0.07 | 0.12 |
Pig K | 2760 | 67 | 88 | 2.70 | 0.11 | 0.14 |
Pig L | 6295 | 167 | 233 | 3.12 | 0.09 | 0.06 |
Pig M | 1351 | 57 | 87 | 2.45 | 0.15 | 0.11 |
Herd 1 Time 2 | 15929 | 273 | 382 | 3.23 | 0.08 | 0.05 |
Pig J Brush | 13361 | 155 | 228 | 2.04 | 0.29 | 0.02 |
Pig K Brush | 5672 | 102 | 141 | 2.38 | 0.14 | 0.07 |
Pig L Brush | 9380 | 251 | 465 | 2.35 | 0.26 | 0.01 |
Pig M Brush | 11265 | 136 | 164 | 2.83 | 0.11 | 0.06 |
Herd 1 Brush | 39678 | 418 | 650 | 2.53 | 0.18 | 0.01 |
a number of OTUs (based on 0.03 cut-off) found in each sample or herd
b the estimated richness of an environment based on 0.03 cut-off
c computed at the RDP Pyrosequencing Pipeline
d calculated with MOTHUR [21] using a distance matrix computed at RDP Pyrosequencing Pipeline
e derived from Simpson's Index where E = (1/D)/S, D is the Simpson's Index and S is the total number of species (OTUs)