Table 2.

Accuracy and call rates (%) for simulated data when σ² = 0.05, for different allele frequencies

Allele frequency	p = 0.1	p = 0.2	p = 0.3	p = 0.4	p = 0.5	p = 0.6	p = 0.7	p = 0.8	p = 0.9
Accuracy	99.72	99.62	99.56	99.52	99.51	99.52	99.56	99.61	99.71
Call rate	96.99	95.87	95.25	94.91	94.78	94.91	95.24	95.89	97.00
Call rate	(BB) 98.23	97.33	96.53	95.82	94.93	94.13	92.94	91.41	89.25
by genotype	(AB) 91.87	93.50	94.24	94.52	94.61	94.49	94.22	93.55	91.86
	(AA) 89.25	91.37	93.00	94.03	94.98	95.81	96.54	97.34	98.24