Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2011 Nov 17;40(5):2041–2053. doi: 10.1093/nar/gkr1042

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2011. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

PMC Copyright notice

Figure 3. — Comparison of algorithms for SIH on NA12878 whole genome fosmid sequence data. (A) Adjusted N50 which takes into consideration block length and number of phased SNPs but not quality; (B) Switch error rate, calculated using comparison with gold-standard trio haplotypes; (C) Quality adjusted N50 which combined measures of completeness and quality; (D) Runtimes of each algorithm on this data set (log scale); (E) QAN50 for ReFHap, DGS, FastHare and HapCUT on subsets of the data built by varying the number of fosmid pools considered; (F) QAN50 for ReFHap, DGS, FastHare and HapCUT for different heterozygosity rates obtained by varying the percentages of SNPs considered.