Table 2.
M. demolitor transcripts from ovaries of unknown origin with virus-related genomic positions or functionsa
| Locus | Ortholog name | Accession no. | nr BLAST hits | Adult mean RPKM (n = 6) | Pupae mean RPKM (n = 6) | P value |
|---|---|---|---|---|---|---|
| CiBV particle proteins | ||||||
| 17a | 17a | CBA62651.1 | Hypothetical protein (C. congregata) | 2,309 | 2 | 2.2e−05 |
| 2287 | 27b | CBH32500.1 | Hypothetical protein Cc50C22.7 (C. congregata) | 1,823 | 1 | 2.2e−05 |
| 1266 | 30b | CBA62633.1 | Hypothetical protein (C. congregata) | 210 | 0 | 8.5E−09 |
| 417 | 35a | CBA62630.1 | None | 129 | 0 | 5.8E−09 |
| 420 | 35a | CBA62630.1 | None | 249 | 0 | 9.2E−08 |
| 615 (transcript 4, 9) | 35a | CBA62630.1 | None | 277 | 0 | 2.7E−05 |
| 576 | 97a | CBA62572.1 | None | 334 | 0 | 7.5E−08 |
| 937 | 97b | CBA62575.1 | Disintegrin and metalloproteinase (Acromyrmex echinator) | 309 | 0 | 0.002 |
| Nudivirus cluster genes from CcBVb | ||||||
| 370 | Cc50C22.3 | CAR82241.1 | Hypothetical protein Cc50C22.3 (C. congregata) | 362 | 0 | 5.1e−08 |
| 3938 | Cc50C22.5 | CAR82243.1 | Hypothetical protein Cc50C22.5 (C. congregata) | 300 | 0 | 2.0e−05 |
| 1624 | 431 | 0 | 6.5e−09 | |||
| 4428 | 601 | 0 | 3.1e−08 | |||
| 2935 | 908 | 0 | 4.4e−08 | |||
| 5909 | Cc50C22.6 | CAR82244 | Hypothetical protein Cc50C22.6 (C. congregata) | 242 | 0 | 1.3e−05 |
| 2485 | 1,230 | 1 | 6.1e−06 |
a
Expression levels are indicated as in Table 1.
b
These genes were fragmented in the M. demolitor assembly.