Table 2.

Genome-wide replication of previously reported GWA SNPs

SNP	Chr	Position	A1	A2	MAF	P-value	Eff	Gene
rs1967017	1	144435002	C	T	0.48	0.451555	2.46	PDZK1
rs12129861	1	144437046	A	G	0.49	0.405643	2.75
rs780094	2	27594741	C	T	0.49	0.492119	−2.27	GCKR
rs780093	2	27596107	C	T	0.49	0.492119	−2.27
rs6442522	3	15415560	C	T	0.47	0.462695	−2.38	NR
rs16890979	4	9531265	C	T	0.32	2.24E-17	−28.29	SLC2A9, WDR1
rs734553	4	9532102	T	G	0.31	4.10E-17	−28.21
rs13129697	4	9536065	T	G	0.36	2.33E-19	−28.99
rs737267	4	9543842	G	T	0.32	2.42E-17	−28.21
rs6855911	4	9545008	A	G	0.32	1.95E-17	−28.25
rs7442295	4	9575478	A	G	0.28	1.98E-14	−27.05
rs3775948	4	9604280	C	G	0.30	1.46E-15	−27.48
rs717615	4	9713768	A	G	0.44	0.003137	−9.57
rs2199936	4	89264355	G	A	0.08	9.68E-06	26.87	ABCG2
rs2231142	4	89271347	G	T	0.08	5.14E-06	27.40
rs3776331	5	142421987	C	T	0.29	0.699763	−1.35	NR
rs675209	6	7047083	C	T	0.20	0.003237	11.88	RREB1
rs742132	6	25715550	A	G	0.32	0.837566	0.71	LRRC16A SLC17A3
rs1165196	6	25921129	A	G	0.46	0.154939	−4.55
rs1183201	6	25931423	T	A	0.47	0.138613	−4.73
rs1165205	6	25978521	A	T	0.47	0.136142	−4.74
rs9478751	6	157482742	A	G	0.08	0.6207	−3.17	ARID1B
rs2244967	10	49894772	T	C	0.22	0.895854	0.50	C10orf72
rs17300741	11	64088038	A	G	0.48	0.420491	−2.59	SLC22A12
rs2078267	11	64090690	C	T	0.49	0.490532	−2.22
rs505802	11	64113648	T	C	0.34	0.003435	10.03
rs1106766	12	56095723	C	T	0.14	0.082384	−8.31	R3HDM2, INHBC
rs4771450	13	102767492	A	G	0.32	0.50946	2.22	NR
rs6085920	20	7128056	A	T	0.10	0.701849	2.10	NR
rs8139900	22	24724724	A	G	0.46	0.959965	−0.16	MYO18B

Note: Replicated regions reaching nominal significance are shown in bold