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. 2009 Dec 7;38(4):1392–1400. doi: 10.1093/nar/gkp1106

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© The Author(s) 2009. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — Distances between N3 of U10 and O4 of U44 (black), O4 of U11 and O4 of U21 (red) and O4 of U12 and N6 of A46 (blue) in the bound form (left column) and unbound form (right column) of the SAM-II riboswitch during the simulations. The colors are consistent with the corresponding interactions shown in Figure 1B.