Table 2.
Class | Description | Linked to | IARC datasets |
---|---|---|---|
database | Database information | somatic_mutation | Implicit |
gene | Gene information | gene_variation | Implicit |
gene_variation | Detailed description of the mutation | gene, somatic_mutation | Gene variations |
somatic_mutation | Summary mutation data, linked to bibliography, sample, and variation data | database, sample, gene_variation, somatic_ref | Somatic mutations |
sample | Tumor topography, morphology, origin, and classification | somatic_mutation, individual | Somatic mutations |
individual | Demographic details, life-style data and genetics of the donor | sample | Somatic mutations |
somatic_ref | Bibliographic references where mutations are described | somatic_mutation | Somatic references |
A summary of published classes and the correspondence with the original datasets.