Table 2.
Putative aspartic acid-rich (Asp-rich) protein genes found in different species, with information on the number of associated ESTs supporting their expression in different tissues, and total number of ESTs for each species
| Gene ID | Species | Db | Genome location | EST no. | Tissue | EST total no. |
|---|---|---|---|---|---|---|
| cit.11563 | C. clementina | H, P | scaffold_9: 2625370-2627369 | 26 | Callus, seedling, leaf (healthy and subjected to biotic and abiotic stress), mixed tissues | 558387 |
| cit.5456 | C. clementina | H, P | scaffold_9: 2630019-2630586 | 13 | Root challenged with nematode or abiotic stresses, seedling, callus, ovaries (abscission zone), cambium | 558387 |
| cit.5776 | C. clementina | H, P | scaffold_9: 2635345-2635854 | 6 | Roots with iron deficiency, seedling, CTV infected leaves | 558387 |
| 29807.t000019 | R. communis | P | 29807: 160071-160289 | 0 | 62592 | |
| 29807.t000020 | R. communis | P | 29807: 162893-163060 | 0 | 62592 | |
| 29807.t000021 | R. communis | P | 29807: 166312-166566 | 0 | 62592 | |
| POPTR_0005s09890 | P. trichocarpa | P | scaffold_5: 6981801-6981953 | 1 | Bark challenged with insects | 163281 |
| Medtr2g097910 | M. truncatula | P | MtChr2: 23065990-23066574 | 0 | 281422 | |
| Medtr2g097920 | M. truncatula | P | MtChr2: 23068445-23068814 | 1 | Virus-infected leaves | 281422 |
| Medtr2g097930 | M. truncatula | P | MtChr2: 23070933-23071212 | 0 | 281422 | |
| Medtr2g097940 | M. truncatula | P | MtChr2: 23073825-23074037 | 0 | 281422 | |
| Medtr2g097960 | M. truncatula | P | MtChr2: 23078947-23079251 | 1 | Flowers, early seeds, late seeds and stems | 281422 |
| Medtr7g104220 | M. truncatula | P | MtChr7: 23576194-23576346 | 0 | ||
| Medtr7g104490 | M. truncatula | P | MtChr7: 23711526-23711678 | 0 | 281422 | |
| AT1G47395 | A. thaliana | P | Chr1: 17383034-17383408 | 2 | Mixed library of flower, leaf and root | 1529700 |
| AT1G47400 | A. thaliana | P | Chr1: 17385717-17386186 | 1 | Inflorescence | 1529700 |
| asmbl_6543.p5arabi0 | A. thaliana | P | Chr1:17389096-17389541 | 37 | Mixed | 1529700 |
| 923037 | A. lyrata | P | scaffold_1: 23646793-23646985 | 0 | 583 | |
| 923038 | A. lyrata | P | scaffold_1: 23656301-23656493 | 0 | 583 | |
| 923039 | A. lyrata | P | scaffold_1: 23659179-23659371 | 0 | 583 | |
| 923040 | A. lyrata | P | scaffold_1: 23667427-23667637 | 0 | 583 | |
| 923041 | A. lyrata | P | scaffold_1: 23669301-23669511 | 0 | 583 | |
| 923042 | A. lyrata | P | scaffold_1: 23670810-23671020 | 0 | 583 | |
| 923043 | A. lyrata | P | scaffold_1: 23672121-23672332 | 0 | 583 | |
| C6T1M0 | G. max | U | Gm05: 8142747-8142956 | 14 | Mixed, root, cotyledon, leaf, seedlings treated with salicylic acid, whole plant | 1461624 |
| C6T2M5 | G. max | U | Gm06: 21775640-21775813 | 7 | Mixed, mixed stressed tissues, root, pod, flower, tissue culture | 1461624 |
| CGD0032389 | T. cacao | CGD | super_9: 9549794-9550390 | 12 | Pod, wood, leaf, flower, cushion | 159996 |
| CGD0032388_alt | T. cacao | CGD | super_9: 9552787-9553408 | 2 | Leaves sprayed with the defense elicitors | 159996 |
| cassava4.1_020818m.g | M. esculenta | P | scaffold07478: 525348-525861 | 6 | Mixed tissues from water stressed plant | 80631 |
| DW225255 | G. hirsutum | G | 3 | Stem, mixed (meristematic region, very young fiber, roots, stem) | 274247 | |
| JG443702 | M. × domestica | G | 10 | Young leaves inoculated with Marssonina coronaria, flower, fruit, bud, leaf | 324742 | |
| GD112635 | C. annuum | G | 4 | Callus | 118060 | |
| BQ513915 | S. tuberosum | G | 3 | Mixed | 249616 | |
| CV506984 | S. tuberosum | G | 1 | Mixed floral | 249616 | |
| BP128846 | N. tabacum | G | 1 | Cell culture | 332667 | |
| CK289672 | N. benthamiana | G | 1 | Abiotic and biotic stress-treated leaves, callus tissue and root tissue | 56080 | |
| BI207662 | S. lycopersicum | G | 2 | Suspension cultures | 299460 | |
| BJ560905 | I. nil | G | 3 | Flowers and flower buds | 62282 | |
| GW342884 | C. sinensis | G | 3 | Leaves induced by Ectropis obliqua feeding | 20,277 | |
| CV534433 | P. vulgaris | G | 1 | Nodules | 116,836 | |
| AJ765027 | G. hybrida | G | 1 | Flower organ (pappus bristles) | 16997 | |
| DN950726 | Q. robur | G | 1 | Tissue culture growing 2 days in hypertonic medium | 81671 | |
| EX249889 | C. papaya | G | 1 | Flowers after meiosis | 77393 | |
| CU434296 | C. hemisphaerica | G | 1 | Not specified | 85991 | |
| CB289635 | V. aestivalis | G | 3 | Leaves | 2101 | |
| DW174778 | L. virosa | G | 1 | Mixed | 30068 | |
| FN002522 | P. × hybrida | G | 2 | Roots, developing ovaries | 50705 | |
| GE593719 | C. cardunculus | G | 1 | Green globe | 36323 |
EST no. refers to ESTs found in dbEST database which typically showed query coverage and percentage of identity above 90%. EST total no. refers to the total number of ESTs deposited in the dbEST database of NCBI until August 2011. Db refers to the database from which the information regarding the Asp-rich protein genes were retrieved. H, Harvest database; P, Phytozome; G, GenBank; U, Uniprot; CGD, Cacao Genome Database