Table 2.
Gene | Chromosome | Coordinate | Substitution | Transcript ID | Protein change | dbSNP129 | 1000 Genomes CEU population, allele frequency | SIFTa | Polyphen 2b | Alleles cases | Alleles controls |
---|---|---|---|---|---|---|---|---|---|---|---|
PROC | chr2 | 127895370 | C > T | NM_000312 | p.R38W | Novel | not present | Dam | Prd | 2 | 0 |
127902716 | C > A | p.H370Q | Novel | not present | Ben | Ben | 1 | 0 | |||
SERPINC1 | chr1 | 172150549 | G > A | NM_000488 | p.P58L | Novel | not present | Dam | Pod | 1 | 0 |
PROZ | chr13 | 112861006 | C > G | NM_003891 | p.L11V | Novel | not present | Ben | Ben | 3 | 0 |
112874101 | G > A | p.R295H | rs3024772 | not present | Ben | Prd | 2 | 2 |
a SIFT-based annotation results, Dam indicates that the mutation is predicted to affect protein function (i.e. 'damaging'), Ben indicates that the mutation is predicted to be tolerated (i.e.'benign').
b Polyphen 2-based annotation results. Prd indicates that the mutation is predicted to be 'probably damaging', Pod indicates that the mutation is predicted to be 'possibly damaging', Ben indicates that the mutation is predicted to be 'benign'.