Table 2.
Solute carrier family members identified in the striped bass ovary transcriptome
| Contig | Gene | Gene ID Danio orthologue | Contig Length (bp) | Solute carrier family function |
|---|---|---|---|---|
| 04292a | slc3a2 | 796322 | 629 | Heavy subunit of the heteromeric amino acid transporters (Na+-independent, transport of large neutral amino acids: phenylalanine, tyrosine, leucine, arginine and tryptophan) |
| 10145 | slc3a2-like | 100003805 | 1740 | Heavy subunit of the heteromeric amino acid transporters (Na+-independent, transport of large neutral amino acids: phenylalanine, tyrosine, leucine, arginine and tryptophan) |
| 09132b | slc4a7 | 568872 | 563 | Electroneutral Na+ and HCO3--dependent cotransporter |
| 11036c | slc7a2 | 100007793 | 815 | Cationic amino acid transporter/glycoprotein-associated amino-acid transporter (transport of the cationic amino acids including arginine, lysine and ornithine) |
| 00672d | slc7a8 | 100007704 | 987 | Na+-independent, transporter of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan; when associated with Slc3a2, acts as an amino acid exchanger |
| 05979 | slc7a10 | 567420 | 240 | Na+-independent, high affinity transport of small neutral D- and L-amino acids |
| 04450 | slc9a3r1 | 327272 | 385 | Na+/H+ exchanger |
| 02807 | slc10a3 | 406519 | 692 | Na+/bile acid cotransporter |
| 06556 | slc10a4 | 556491 | 249 | Na+/bile acid cotransporter |
| 03289 | slc12a5-like | 572215 | 251 | Electroneutral cation/Cl- cotransporter (K+/Cl- transporter) |
| 04100 | slc19a2-like | 100329244 | 778 | Thiamine transporter |
| 00585 | slc20a1a | 406458 | 2129 | Na+-dependent PO43- transporter |
| 05003 | slc20a1b | 321541 | 246 | Na+-dependent PO43- transporter |
| 00176 | slc25a3 | 322362 | 1448 | Mitochondrial carrier (PO43- transporter) |
| 01147 | slc25a5 | 192321 | 1302 | Mitochondrial carrier (ADT/ATP translocator) |
| 01400e | slc25a12 | 337675 | 693 | Mitochondrial carrier (aspartate/glutamate transporter) |
| 01037 | slc25a26 | 560478 | 349 | Mitochondrial carrier (S-adenosylmethionine transporter) |
| 09234 | slc25a29 | 569608 | 579 | Mitochondrial carrier (carnitine/acylcarnitine transporter) |
| 06849 | slc25a43 | 796731 | 254 | Mitochondrial carrier |
| 07197f | slc25a46 | 436831 | 251 | Mitochondrial carrier |
| 08784 | slc26a6-like | 557779 | 215 | Multifunctional anion exchanger (Pendrin-like; Cl-, oxalate, SO42-, and HCO3- transporter) |
| 04105 | slc27a1 | 541410 | 265 | Fatty acid transporter (FATP-1; long-chain fatty acid translocator) |
| 01322g | slc29a1 | 563580 | 260 | Facilitative nucleoside transporter (cellular uptake of nucleosides) |
| 05237 | slc30a2 | 563540 | 293 | Zinc transporter |
| 06016 | slc30a2-like | 560642 | 608 | Zinc transporter |
| 05293h | slc30a5 | 436594 | 506 | Zinc transporter |
| 03716 | slc30a7 | 327439 | 392 | Zinc transporter (zinc efflux transporter) |
| 09883 | slc31a2 | -- | 2142 | Copper transporter (low affinity copper uptake) |
| 02632 | slc35a2 | 368487 | 186 | Nucleoside-sugar transporter (UDP-galactose transporter) |
| 07709 | slc35e1-like | 100332364 | 249 | Nucleoside-sugar transporter |
| 04693 | slc38a8-like | 795255 | 414 | Na+-coupled neutral amino acid transporter |
| 05870 | slc38a9 | 562137 | 243 | Na+-coupled neutral amino acid transporter |
| 02706 | slc38a11 | 550337 | 347 | Na+-coupled neutral amino acid transporter |
| 02072 | slc39a3 | 321324 | 414 | Metal ion transporter (zinc influx transporter) |
| 08253i | slc39a13 | 368686 | 239 | Metal ion transporter (zinc influx transporter) |
| 05275j | slc44a1 | 100333377 | 256 | Choline transporter |
| 02670 | slc44a2-like | 321056 | 269 | Choline transporter |
| 07718 | slc44a4-like | 393385 | 255 | Choline transporter |
| 05152 | slc48a1a | 436697 | 853 | Heme transporter hrg1-B |
For contigs with superscripted letters, see also the following corresponding contigs: a02586 (slc3a2); b07936, b03956 (slc4a7); c00241, c09351, c04452 (slc7a2); d04260 (slc7a8); e07750 (slc25a12); f06248 (slc25a46); g04062 (slc29a1); h09154 (slc30a5); i06486 (slc39a13); j02053 (slc44a1)