Table 4.
The number of pathway genes identified from FB and phenylpropanoid biosynthesis pathways by (a) seed-gene-set III and (b) seed-gene-set IV in the A.thaliana microarray dataset from shoot and root tissues subjected to drought stress
| Top | pwsrc.knorm | pwsrc.null | pearson.mean | pearson.max | GLM | |
|---|---|---|---|---|---|---|
| (a) | 10 | 6 (2) | 0 | 0 | 2 | 4 (1) |
| 20 | 9 (3) | 1 | 0 | 3 | 5 (1) | |
| 30 | 10 (3) | 1 | 0 | 4 | 6 (2) | |
| 50 | 11 (3) | 1 | 0 | 4 | 6 (2) | |
| (b) | 10 | 6 (2) | 2 | 1 | 4 | 5 (1) |
| 20 | 9 (3) | 2 | 2 | 4 | 5 (1) | |
| 30 | 10 (3) | 2 | 2 | 4 | 6 (2) | |
| 50 | 13 (4) | 2 | 2 | 4 | 6 (2) | |
For complete results, see Supplementary Table S6. The number of identified genes from phenylpropanoid pathways is designated in the parenthesis adjacent to the total number of identified genes.