. 2012 Mar 19;7(3):e33834. doi: 10.1371/journal.pone.0033834

Table 1. Abundance of purified proteins^‡ in each TAP-tag preparation.

Protein	alternative names	polyA mRNA^*	TAP	INI1	SS18	SS18SSX1	BCL7A	BCL7C	DPF2	BRD9	PHF10
BRG1	SMARCA4	5.93	0	0.303	5.337	4.440	2.039	2.290	1.662	0.141	0.984
BRM	SMARCA2	1.45	0	0	1.339	0.730	0.116	0.280	0.179	0	0.028
BAF250A	SMARCF1, ARID1A	1.63	0	0.027	5.692	2.079	0.379	1.766	1.485	0.027	0.027
BAF250B	ARID1B, OSA1	2.04	0	0	2.728	1.540	0.179	0.638	0.315	0.028	0
BAF200	ARID2, zipzap	nd	0	0.122	0	0.029	0.029	0.122	0	0	0.884
BAF180	Polybromo-1	4.36	0	0.457	0	0	0	0.248	0	0	1.769
BAF170	SMARCC2	9.25	0	1.532	2.793	2.360	0.438	1.432	1.154	0.084	1.745
BAF155	SMARCC1	6.94	0	2.981	5.813	3.467	1.239	2.043	2.831	0.080	0.468
BAF60A	SMARCD1	4.01	0	0.15	3.037	3.037	0.784	2.054	1.477	0.072	0.630
BAF60B	SMARCD2	7.69	0	0.719	7.161	4.080	1.762	2.875	2.384	0	0.607
BAF60C	SMARCD3	3.02	0	0	1.102	0.346	0	0.346	0.16	0	0
BAF57	SMARCE1	9.97	0	0.957	11.115	5.190	1.154	3.642	3.217	0.957	1.61
BAF53A	ACTL6A, ArpNß	8.37	0.233	0.110	6.305	6.305	2.511	2.511	0.874	0.369	0.52
BAF53B	ACTL6B, ArpNα	1.68	0	0	0	0	0	0	0	0	0
BAF47	SMARCB1, INI1, SNF5	5.81	0	0.931	5.449	3.160	1.154	3.160	0.551	0.245	0.823
BAF45A	PHF10	3.08	0	0.086	0	0	0	0	0	0	2.728
BAF45B	DPF1	0.50	0	0	0	0.110	0	0.110	0	0	0
BAF45C	DPF3, CERD4	0.26	0	0	0	0	0	0.105	0	0	0
BAF45D	DPF2, REQ, UBID4	2.80	0	0	4.623	1.610	0.101	1.371	1.873	0	0
SS18	SYT, SSXT	3.73	0	0	9.00	9.00	0.78	0	2.16	1.000	0
SS18L1	CREST	9.92	0	0	0	0	0	0.585	0.585	0	0
BCL7A	-	nd	0	0	0.874	1.310	3.329	0	0.585	0.233	0
BCL7B	Hom s 3	4.77	0	0	0	0.292	0	0	0	0	0
BCL7C	-	4.18	0	0	0	1.783	0	11.915	0	0	0
BRD7	CELTIX-1	nd	0	0.064	0	0	0	0	0	0	0.645
BRD9	MU-RMS-40.8	0.18	0	0	0.186	0.668	0	0.089	0	4.505	0
SSX1	-	nd	0	0	0	1.154	0	0	0	0	0
GLTSCR1	GSCR1	1.20	0	0	0.619	1.116	0.055	0.708	0	0	0
SRRM2	-	8.15	0	0	0	0	0	0	0	0	0
MYBBP1A	p160	3.72	0	0	0	0	0	0	0	0	0
NONO	NMT55, p54(nrb)	nd	0.066	0	0	0.066	0	0	0	1.966	0.292
NUMA1	-	3.23	0	0	0	0	0	0	0	0.167	0
SFPQ	PSF	11.42	0.199	0	0	0	0	0	0	0.624	0.528
DDX3X	HLP2	12.18	0.116	0	0	0	0	0	0	10.159	0.315
DDX17	p72	11.85	0.058	0	0	0	0	0	0.058	9.578	0.136
RBM14	COAA	7.10	0	0	0	0	0	0	0	4.736	0
DDX5	p68	17.37	0	0	0	0	0	0	0.061	4.223	0.805
actin	actg1	30.37	4.109	1.371	4.109	6.499	2.481	2.831	0.778	7.254	3.437

^‡

Protein abundance is represented by the exponentially modified Protein Abundance Index [96].

mRNA abundance was estimated from probe set fluorescence signal intensities, as recommended by Affymetrix (see Data S2).

Table 1. Abundance of purified proteins‡ in each TAP-tag preparation.

Table 1. Abundance of purified proteins^‡ in each TAP-tag preparation.