Table 5.
dNTP |
Kd, dNTP (μM) |
kp (s−1) |
kp/Kd, dNTP (μM−1s−1) |
Efficiency Ratioa,b |
Fidelityc | Fidelity Ratiob,d |
Probabilitye (%) |
---|---|---|---|---|---|---|---|
Template dGAP (20-mer/26-mer-dGAP) | |||||||
dCTP | 267 ± 40 | 1.7 ± 0.1 | 6.5×10−3 | 5.7 | - | - | 71 |
dATP | 497 ± 98 | (7.0 ± 0.6)×10−1 | 1.4×10−3 | 0.4 | 1.8×10−1 | 11 | 15 |
dGTP | 346 ± 80 | (3.4 ± 0.3)×10−1 | 9.9×10−4 | 1.1 | 1.3×10−1 | 4.5 | 11 |
dTTP | 726 ± 237 | (2.4 ± 0.4)×10−1 | 3.2×10−4 | 2.5 | 4.7×10−2 | 2.2 | 3.5 |
Template dC – pause site (21-mer/26-mer-dGAP) | |||||||
dGTP | 43 ± 7 | (2.3 ± 0.1)×10−3 | 5.3×10−5 | 208 | - | - | 60 |
dATP | 203 ± 36 | (5.5 ± 0.3)×10−3 | 2.7×10−5 | 1.5 | 3.4×10−1 | 94 | 31 |
dCTP | 693 ± 45 | (4.1 ± 0.1)×10−3 | 5.9×10−6 | 12 | 1.0×10−1 | 17 | 6.7 |
dTTP | 468 ± 90 | (12 ± 1)×10−4 | 2.5×10−6 | 16 | 4.5×10−2 | 13 | 2.8 |
Calculated as (kp/Kd, dNTP)normal/(kp/Kd, dNTP)damaged.
The values are from Supplementary Table 2 using control 26mer DNA template.
Calculated as (kp/Kd, dNTP)incorrect/[(kp/Kd, dNTP)correct + (kp/Kd, dNTP)incorrect].
Calculated as Fidelitydamaged/Fidelitynormal.
Calculated as ((kp/Kd, dNTP)damaged/[Σ(kp/Kd, dNTP)damaged])×100.
All given errors were derived from data fitting.