Table 6.
dNTP |
Kd, dNTP (μM) |
kp (s−1) |
kp/Kd, dNTP (μM−1s−1) |
Efficiency Ratioa,b |
Fidelityc | Fidelity Ratiob,d |
Probabilitye (%) |
---|---|---|---|---|---|---|---|
Template dGAP (20-mer/26-mer-dGAP) | |||||||
dCTP | 380 ± 66 | (8.8 ± 0.6)×10−2 | 2.3×10−4 | 7.0 | - | - | 97 |
dATP | 338 ± 22 | (10.3 ± 0.2)×10−4 | 3.0×10−6 | 5.0 | 1.3×10−2 | 1.4 | 1.3 |
dGTP | 252 ± 29 | (5.3 ± 0.2)×10−4 | 2.1×10−6 | 7.6 | 9.0×10−3 | 0.9 | 0.9 |
dTTP | 762 ± 60 | (13.1 ± 0.5)×10−4 | 1.7×10−6 | 118 | 7.3×10−3 | 0.1 | 0.7 |
Template dC – pause site (21-mer/26-mer-dGAP) | |||||||
dGTP | 264 ± 76 | (5.9 ± 0.6)×10−5 | 2.2×10−7 | 4.5×103 | - | - | 47 |
dATP | ND | ND | - | - | - | - | - |
dCTP | ND | ND | - | - | - | - | - |
dTTP | 573 ± 73 | (14.1 ± 0.8)×10−5 | 2.5×10−7 | 680 | 5.3×10−1 | 5.5 | 53 |
Calculated as (kp/Kd, dNTP)normal/(kp/Kd, dNTP)damaged.
The values are from Supplementary Table 3 using control 26mer DNA template.
Calculated as (kp/Kd, dNTP)incorrect/[(kp/Kd, dNTP)correct + (kp/Kd, dNTP)incorrect].
Calculated as Fidelitydamaged/Fidelitynormal.
Calculated as ((kp/Kd, dNTP)damaged/[Σ(kp/Kd, dNTP)damaged])×100.
ND denoted ‘not determined’.
All given errors were derived from data fitting.