TABLE 2.
Frequency of 80bp SMYD1 promoter motif near integration site sets in the human genome
Significant deviation from LEDGF BC in Mann-Whitney test is shown.
Cell line | No sites | No./5-kb window | No./10-kb window | |
---|---|---|---|---|
EIAV sites | WT | 717 | 45.3 | 65.8 |
KD | 448 | 40b | 59.8a | |
LEDGF BC | 862 | 47.8 | 70.2 | |
ΔN93-LEDGF | 157 | 43.9 | 62.4c | |
PWWPHDGF-LEDGF | 610 | 44.6 | 67.4 | |
PWWPHRP2-LEDGF | 802 | 48.6 | 68 | |
HDGF-LEDGF325–530 | 873 | 52.8 | 71.7 | |
MRC sites | MRC WT | 2151 | 35.6 | 52.5 |
MRC KD | 1344 | 34.4 | 53.6 | |
MRC LEDGF BC | 2586 | 34.4 | 53.4 | |
MRC ΔN93-LEDGF | 471 | 36.5 | 55.2 | |
MRC PWWPHDGF-LEDGF | 1827 | 34 | 54.2 | |
MRC PWWPHRP2-LEDGF | 2406 | 33.4 | 52.1 | |
MRC HDGF-LEDGF325–530 | 2619 | 34.1 | 53.4 |
a p < 0.001.
b p < 0.01.
c p < 0.05.