Table 1.
Randomization schemes used to introduce variability at specific positions of ankyrin repeats (a)
Repeat position | Degenerated codons | Subset of encoded amino acid |
---|---|---|
2 | VDK, DMY, RAA | A, D, E, G, H, I, K, L, M, N, Q, R, S, T, V, Y |
3 | VDK, DMY, VAN | A, D, E, G, H, I, K, L, M, N, Q, R, S, T, V, Y |
5 | VDK, DMY, VAN, TGG | A, D, E, G, H, I, K, L, M, N, Q, R, S, T, V, W, Y |
10 | CTG, TGG, TAC, RTC | I, L, V, W, Y |
13 | KCK, TAC, CGY, VAR | A, E, F, I, K, L, M, Q, R, S, Y |
14 | KCK, VAR, AAC, SGY, YAY, NTG | A, E, G, H, K, L, M, N, Q, R, S, V, Y |
(a) For each position indicated on the leftmost column, the degenerated codons used for the microgene synthesis and the corresponding encoded amino-acids are indicated in the middle and rightmost columns, respectively. Standard letter for mixed bases refer to: N = A/T/G/C, V = A/C/G, D = A/G/T, K = G/T, M = A/C, Y = C/T, R = A/G.