Table 2. Bacterial strains and plasmids used in this study.
Species or plasmids | Source/Reference | Genotype/Features |
Bacterial strains | ||
E. coli BW25113/pKD46a | CGSC 7739/ [25] | F- lacI+ rrnBT14 ΔlacZWJ16 hsdR514 |
ΔaraBADAH33 ΔrhaBADLD78 | ||
E. coli MTea1 | This study | F- lacI+ rrnBT14 ΔlacZWJ16 hsdR514 |
ΔaraBADAH33 ΔrhaBADLD78 Δ(rnpA)::cat | ||
Proteus mirabilis b | Smith College Collection | |
Pseudomonas aeruginosa b | ATCC 10145 | |
Acinetobacter baumannii b | ATCC 17978D | |
Neisseria gonorrhoeae b | ATCC 700825D | |
Bacillus subtilis b | Smith College Collection | |
Streptococcus oralis b | ATCC 9811 | |
Staphylococcus aureus b | Smith College Collection | |
Thermotoga maritima MSB8b | [23] | |
Salmonella typhimurium TT23216c | John Roth | |
Plasmids | ||
pCA24Nd | JW 36815/ [24] | |
pSAVE | This study | Gmr; Ampr; rnpA and GFP expression |
pSWAP-Ece | This study | Kanr; E. coli rnpA expression |
pSWAP-Pme | This study | Kanr; P. mirabilis rnpA expression |
pSWAP-Pae | This study | Kanr; P. aeruginosa rnpA expression |
pSWAP-Abe | This study | Kanr; A. baumannii rnpA expression |
pSWAP-Nge | This study | Kanr; N. gonorrhoaea rnpA expression |
pSWAP-Bse | This study | Kanr; B. subtilis rnpA expression |
pSWAP-Soe | This study | Kanr; S. oralis rnpA expression |
pSWAP-Sae | This study | Kanr; S. aureus rnpA expression |
pSWAP-Tme | This study | Kanr; T. maritima rnpA expression |
E. coli host for the rnpA knockout protocol; acquired from E. coli Genetic Stock Center, Yale, USA.
used for amplification of the rnpA gene.
template for the amplification of the antibiotic cassette for the gene inactivation protocol; provided by John Roth, University of California, Davis, USA.
template for the gfp amplification.
Heterologous complementation plasmids.