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. 2012 Mar 20;7(3):e32456. doi: 10.1371/journal.pone.0032456

Table 2. Bacterial strains and plasmids used in this study.

Species or plasmids Source/Reference Genotype/Features
Bacterial strains
E. coli BW25113/pKD46a CGSC 7739/ [25] F- lacI+ rrnBT14 ΔlacZWJ16 hsdR514
ΔaraBADAH33 ΔrhaBADLD78
E. coli MTea1 This study F- lacI+ rrnBT14 ΔlacZWJ16 hsdR514
ΔaraBADAH33 ΔrhaBADLD78 Δ(rnpA)::cat
Proteus mirabilis b Smith College Collection
Pseudomonas aeruginosa b ATCC 10145
Acinetobacter baumannii b ATCC 17978D
Neisseria gonorrhoeae b ATCC 700825D
Bacillus subtilis b Smith College Collection
Streptococcus oralis b ATCC 9811
Staphylococcus aureus b Smith College Collection
Thermotoga maritima MSB8b [23]
Salmonella typhimurium TT23216c John Roth
Plasmids
pCA24Nd JW 36815/ [24]
pSAVE This study Gmr; Ampr; rnpA and GFP expression
pSWAP-Ece This study Kanr; E. coli rnpA expression
pSWAP-Pme This study Kanr; P. mirabilis rnpA expression
pSWAP-Pae This study Kanr; P. aeruginosa rnpA expression
pSWAP-Abe This study Kanr; A. baumannii rnpA expression
pSWAP-Nge This study Kanr; N. gonorrhoaea rnpA expression
pSWAP-Bse This study Kanr; B. subtilis rnpA expression
pSWAP-Soe This study Kanr; S. oralis rnpA expression
pSWAP-Sae This study Kanr; S. aureus rnpA expression
pSWAP-Tme This study Kanr; T. maritima rnpA expression
a

E. coli host for the rnpA knockout protocol; acquired from E. coli Genetic Stock Center, Yale, USA.

b

used for amplification of the rnpA gene.

c

template for the amplification of the antibiotic cassette for the gene inactivation protocol; provided by John Roth, University of California, Davis, USA.

d

template for the gfp amplification.

e

Heterologous complementation plasmids.