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. 2012 Mar 21;102(6):1363–1371. doi: 10.1016/j.bpj.2012.01.056

Figure 5.

Figure 5

Potentials of mean force for Cl transport from the Sext site to the intracellular solution in the protonated GLUex system (ApBp system). The single ion PMF is shown via a black line. Gray line represents the PMF for transport of one Cl ion from Scen to intracellular solution with another Cl bound to the Sext site. The position of the bound Cl is indicated by a solid circle in the figure. In the PMF calculations, the bound Cl ion is restrained using an isotropic three-dimensional harmonic restraint (with force constant of 1.0 kcal·mol−1·Å−2) at the external binding site Sext suggested by the crystal structure (PDB: 3ORG).