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. 2012 Feb 22;5:116. doi: 10.1186/1756-0500-5-116

Figure 4.

Figure 4

Comparison of MaxSub and gMaxSub. The original MaxSub algorithm on CPU searches the largest subset by shifting a window W along the residue alignment R. The gMaxSub searches the maximal alignment by concurrently dispatching each calculation of W to different GPU threads.