Table. Primers and probe used for diagnostic PCR and primers used to sequence Saffold virus, 2009*.
Assay, primer | Type | Sequence, 5′ → 3′ |
---|---|---|
Diagnostic RT-PCR | ||
Saffold F | Forward primer | CTA WCA TGC CTC CCC GAT T |
Saffold R | Reverse primer | GYT TAG ACC GGG GGA ACC |
Saffold Probe | Probe | TTT CTG CCC TGC TGG GCG G |
VP2 typing | ||
SAFV VP2 OF | Outer forward primer | GAR ATG ACY AAY CTB TCW GAY AGA GT |
SAFV VP2 OR | Outer reverse primer | CCR TTR AAN ACS GGY TTN AC |
SAFV VP2 IF | Inner forward primer | CGG CYA YAA ACA CKC AAT C |
SAFV VP2 IR | Inner reverse primer | TTD GCR TGY TGN GTC CA |
VPI typing, type 2 specific | ||
SAFV-2 VP1 OF1 | Outer forward primer 1 | GCA GAA AAA GGA AAG GTT GC |
SAFV-2 VP1 OF2 | Outer forward primer 2 | GCA GAA AAA GGC AAA GTT GC |
SAFV-2 VP1 OR | Outer reverse primer | TCT TGG RCA AAA CAC TCT CA |
SAFV-2 VP1 IF | Inner forward primer | CYA TAG CTC TTC CTG AAA AYC A |
SAFV-2 VP1 IR | Inner reverse primer | TGR ACC GAA AAY CTG TCT GC |
*RT-PCR, real-time reverse transcription PCR; SAFV, Saffold virus: VP, viral protein.