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. 2012 Feb 29;71(1):1–210. doi: 10.3114/sim0001

Table 1.

Isolates and accession numbers used in the phylogenetic analyses.

Species Isolate No. Herbarium No. Substrate/Host Country GenBank Accession No.
act ITS LSU rpb1 tef1 tub
Allantonectria miltina A.R. 4391, CBS 121121 BPI 878442 Leaves decaying, Agave americana Italy HM484514a HM484547a HM484572a HM484587a HM484524a HM484609a
Calonectria acicola CBS 114813 PDD Phoenix canariensis New Zealand GQ280547a GQ280669a GQ267292a DQ190591a
Calonectria asiatica CBS 112711 PDD Debris Thailand GQ280551 GQ280673 AY725702a AY725613
Calonectria densa CBS 125249, CMW 31184 Soil Ecuador GQ280645 GQ280767 GQ267350 GQ267230
Corallomycetella sp. A.R. 4547, CBS 123826, C.L.L. 8064 BPI 881071 Bark French Guiana JF832440 JF832594 JF832679 JF832763 JF832517 JF832838
Cosmospora coccinea A.R. 2741, CBS 114050 BPI 802729 Inonotus nodulosus Germany GQ505967a HM484537a GQ505990a GQ506020a HM484515a HM484589a
Cosmospora magnusiana A.R. 4453, CBS 129430 BPI 878454 Rhus typhina USA JF832441 JF832595 JF832680 JF832764 JF832593 JF832839
Cosmospora vilior CBS 126109, G.J.S. 90-217 BPI 744778 Xylaria sp. Venezuela JF832442 JF832596 JF832681 JF832765 JF832518 JF832840
Cosmospora viliuscula CBS 455.96, G.J.S. 96-6 BPI 744671 Xylaria sp. Puerto Rico GQ505966a HM484855a GQ506003a GQ506032a HM484851a HM484876a
Cosmospora wegeliniana CBS 128986, G.J.S. 93-15 BPI 802567 Diatrypaceae France GQ505968a HM484856a GQ506006a GQ506035a HM484849a HM484878a
Cyanonectria cyanostoma CBS 101734, G.J.S. 98-127 BPI 748307 Buxaceae France GQ505961a HM484558a FJ474081a GQ506017a HM484535a HM484611a
Emericellopsis glabra A.R. 3614, CBS 125295 BPI 871323 Soil Mexico GQ505969a HM484860a GQ505993a GQ506023a HM484843a HM484879a
Haematonectria illudens G.J.S. 85-67, ICMP 9708 PDD 50076 Bark New Zealand JF832443 JF832660 JF832762 JF832837 JF832841
Hydropisphaera fungicola A.R. 4170, CBS 122304 BPI 878275 Ulocladium atrum, associated with Melampsora rust on decaying leaves of Populus trichocarpa USA GQ505970a HM484863a GQ505995a GQ506025a HM484845a HM484877a
Lanatonectria flocculenta CBS 126441, G.J.S. 01-66 Bark Ecuador JF832481 JF832656 JF832713 JF832546 JF832913
Lanatonectria flocculenta MAFF 241413 TUA-TPP-h 105-2 Bark Japan JF832657 JF832714 JF832547 JF832914
Leuconectria clusiae ATCC 22228 Soil USA AY489732a AY489664a
Nectria antarctica A.R. 2767, ATCC 204178, CBS 115033 BPI 746217 Dead stem of Berberis aquifolium USA HM484501a HM484556a HM484560a HM484575a HM484516a HM484601a
Nectria asiatica MAFF 241439 BPI 879972 Bark of dead wood Japan HM484505a HM484701a HM484563a HM484604a
Nectria aurantiaca CBS 308.34 Ulmus sp. UK JF832482 JF832628 JF832682 JF832766 JF832519 JF832886
Nectria balansae MAFF 241419 BPI 881057, TUA-TPP-h 152 Bark of dead wood Japan JF832483 JF832651 JF832709 JF832520 JF832906
Nectria balansae A.R. 4446, CBS 123351 BPI 878477 Coronilla sp. France GQ505977a HM484552a GQ505996a GQ506026a HM484525a HM484607a
Nectria balansae CBS 124070 Twigs China JF832484 JF832652 JF832710 JF832521 JF832907
Nectria balansae A.R. 4635, CBS 129349 Twigs China JF832485 JF832653 JF832711 JF832790 JF832522 JF832908
Nectria berberidicola A.R. 4662, C.L.L. 7199, CBS 128669 LIP YMNC083 Berberis vulgaris France JF832487 JF832662 JF832712 JF832767 JF832538 JF832887
Nectria cinnabaarina A.R. 4477, CBS 125165 BPI 879981 Dead twigs of Aesculus sp. France HM484503a HM484548a HM484562a HM484577a HM484527a HM484606a
Nectria dematiosa Subclade A CBS 126570, G.J.S. 94-37 BPI 749337 Bark USA HM484502a HM484557a HM484561 a HM484576a HM484534a HM484603a
Nectria dematiosa Subclade B A.R. 2699, CBS 125125 BPI 802212 Dead twigs of Acer macrophyllum Canada HM484612a HM484676a HM484717a HM484757a HM484645a HM484797a
Nectria dematiosa Subclade C MAFF 241430 BPI 879985 Branches standing Japan HM484617a HM484704a HM484750a HM484795a HM484653a HM484803a
Nectria magnispora CBS 129362, TPP-h122 TUA-TPP-h122 Twigs Japan JF832496 JF832663 JF832683 JF832786 JF832539 JF832896
Nectria magnispora CBS 129361, TPP-h141 TUA-TPP-h141 Twigs Japan JF832497 JF832664 JF832685 JF832787 JF832540 JF832897
Nectria magnispora MAFF 241418, TPP-h142 BPI 881044, TUA-TPP-h142 Twigs Japan JF832498 JF832665 JF832686 JF832788 JF832541 JF832898
Nectria mariae A.R. 4274, CBS 125294 BPI 881045 Buxus sempervirens France JF832499 JF832629 JF832684 JF832789 JF832542 JF832899
Nectria nigrescens A.R. 4211, CBS 125148 BPI 871083 Dead twigs of dicotyledonous tree USA HM484618a HM484707a HM484720a HM484781a HM484672a HM484806a
Nectria nigrescens A.R. 4271, CBS 128988 Elaeagnus angustifolia USA JF832488 JF832630 JF832687 JF832768 JF832888
Nectria nigrescens A.R. 4270, CBS 128983 Elaeagnus angustifolia USA JF832490 JF832633 JF832692 JF832769 JF832889
Nectria nigrescens A.R. 4268 Elaeagnus angustifolia USA JF832493 JF832634 JF832688 JF832771 JF832890
Nectria nigrescens A.R. 4266, CBS 129808 Ulmus pumila USA JF832495 JF832632 JF832690 JF832773 JF832894
Nectria nigrescens A.R. 4267, CBS 129426 Gleditsia triacanthos var. inermis USA JF832491 JF832636 JF832693 JF832772 JF832891
Nectria nigrescens A.R. 4272, CBS 128987 Ulmus pulmila USA JF832489 JF832635 JF832691 JF832770 JF832892
Nectria nigrescens A.R. 4269, CBS 128982 Gleditsia triacanthos var. inermis USA JF832494 JF832631 JF832694 JF832774 JF832893
Nectria nigrescens A.R. 4306, CBS 128984 BPI 878879 Tilia sp. USA JF832492 JF832637 JF832689 JF832775 JF832895
Nectria polythalama A.R. 4586, CBS 128672 BPI 879097, PC 961 Twigs New Zealand JF832638 JF832695 JF832776 JF832523 JF832900
Nectria polythalama A.R. 4579, CBS 129240 BPI 879111, PC 975 Dead log of Disoxylon? sp. New Zealand JF832707 JF832779 JF832525
Nectria polythalama A.R. 4575, CBS 128671 BPI 879115, PC 979 Corynocarpus laevigatus New Zealand JF832666 JF832708 JF832778 JF832526
Nectria polythalama ICMP 2505 PDD 26407 Eucalyptus ficifolia New Zealand JF832500 JF832641 JF832696 JF832777 JF832524 JF832901
Nectria pseudocinnabarina CBS 129366, G.J.S. 09-1359 BPI 881037 Dead wood Venezuela JF832501 JF832642 JF832697 JF832533
Nectria pseudocinnabarina CBS 129364, G.J.S. 09-1356 BPI 881035 Dead wood Venezuela JF832504 JF832644 JF832698 JF832534
Nectria pseudocinnabarina CBS 129365, G.J.S. 09-1358 BPI 881036 Dead wood Venezuela JF832503 JF832645 JF832700 JF832536 JF832904
Nectria pseudocinnabarina A.R. 4548, CBS 128673 BPI 881034, C.L.L. 8299 Dead wood Martinique JF832643 JF832716 JF832537
Nectria pseudocinnabarina A.R. 4567, CBS 123496, Y.H. 08-21 BPI 881033 Dead wood French Guiana JF832502 JF832646 JF832699 JF832535 JF832905
Nectria pseudotrichia CBS 551.84 Bark Japan GQ505976a HM484554a GQ506000a GQ506030a HM484532a HM484602a
Nectria pseudotrichia MAFF 241394 BPI 881039 Twigs Japan JF832507 JF832639 JF832705 JF832785 JF832527
Nectria pseudotrichia ICMP 2245 J.M. Dingley 6857 Theobroma cacao Papua New Guinea JF832508 JF832640 JF832701 JF832780 JF832532
Nectria pseudotrichia MAFF 241452 BPI 881038 Bark Japan JF832649 JF832706 JF832781 JF832531 JF832903
Nectria pseudotrichia CBS 652.83, C.T.R. 72-72 PDD 7908 Bark Venezuela JF832505 JF832648 JF832703 JF832782 JF832528
Nectria pseudotrichia CBS 128670, Y.H. 10-04 BPI 881040 Acer sp. USA JF832650 JF832704 JF832783 JF832529
Nectria pseudotrichia G.J.S. 09-1329 BPI 881041 Dead wood Venezuela JF832506 JF832647 JF832702 JF832784 JF832530 JF832902
Nectria sordida CBS 125119, G.J.S. 86-117 NY Living woody vine French Guiana JF832486 HM484857a HM484868a HM484871a HM484848a HM484874a
Nectriopsis exigua CBS 126110, G.J.S. 98-32 BPI 748377 Myxomycete Puerto Rico GQ505979a HM484865a GQ505986a GQ506014a HM484852a HM484883a
Neocosmospora haematococca MP 4 ATCC 42366, NRRL 22277 Zanthoxylum sp. Japan AF178401a AF178370a
Neocosmospora haematococca MP 3 ATCC 44934, NRRL 22230 Morus sp. Japan AF178420a AF178389a
Neocosmospora vasinfecta A.R. 3587, CBS 122565 BPI 871326 Soil South Africa HM484864a HM484842a HM484881a
Ophionectria trichospora CBS 109876, G.J.S. 01-206 BPI 863854 Bark Cameroon HM484867a HM484847a HM484886a
Pleonectria aquifolii CBS 307.34 BPI 550125 Ilex aquifolium UK JF832444 JF832597 JF832718 JF832792 JF832548 JF832842
Pleonectria aurigera A.R. 3717, CBS 109874 BPI 841465 Twigs dead, Fraxinus excelsior France HM484511a HM484551a HM484573a HM484586a HM484521a HM484600a
Pleonectria austroamericana A.R. 3491, CBS 125134 BPI 746395, NCSU Gleditsia triacanthos USA JF832513 JF832654 JF832759 JF832834 JF832587 JF832881
Pleonectria austroamericana A.R. 3492, CBS 125135 NCSU Robinia pseudoacacia USA JF832514 JF832655 JF832760 JF832835 JF832588 JF832882
Pleonectria austroamericana A.R. 2808, CBS 126114 BPI 746395 Gleditsia triacanthos USA GQ505960a HM484555 GQ505988a GQ506016a HM484520a HM484597a
Pleonectria balsamea A.R. 2798, CBS 125132 BPI 746322 Abies fraseri USA JF832453 JF832598 JF832719 JF832800 JF832556 JF832846
Pleonectria balsamea CBS 129159, Y.H. 10-07b BPI 881047 Abies balsamea USA JF832456 JF832601 JF832721 JF832803 JF832557
Pleonectria balsamea A.R. 3493, CBS 125136 NCSU Abies fraseri USA JF832455 JF832600 JF832727 JF832804 JF832559 JF832847
Pleonectria balsamea CBS 129160, Y.H. 10-08c BPI 881050 Abies balsamea USA JF832457 JF832667 JF832731 JF832807 JF832558 JF832851
Pleonectria balsamea A.R. 4568, CBS 129371, Y.H. 09-01 BPI 881046 Abies balsamea Canada JF832609 JF832852
Pleonectria balsamea CBS 129429, Y.H. 10-11f BPI 881048 Abies balsamea USA JF832458 JF832610 JF832730 JF832802 JF832562 JF832850
Pleonectria balsamea A.R. 3495, CBS 125137 NCSU Abies fraseri USA JF832454 JF832599 JF832729 JF832805 JF832561 JF832849
Pleonectria balsamea CBS 129340, Y.H. 10-13h BPI 881051 Abies balsamea USA JF832459 JF832669 JF832728 JF832806 JF832853
Pleonectria balsamea CBS 129428, Y.H. 10-10e BPI 881049 Abies balsamea USA JF832460 JF832668 JF832732 JF832801 JF832560 JF832848
Pleonectria berolinensis A.R. 2776, CBS 126112 BPI 746346 Ribes rubrum Austria HM484510a HM484543a HM484568a HM484583a HM484517a HM484594a
Pleonectria berolinensis A.R. 4618, CBS 128980 HB7896A Ribes nigrum Mongolia JF832479 JF832623 JF832750 JF832829 JF832584 JF832875
Pleonectria boothii A.R. 4481, CBS 128977 BPI 881052 Picea abies Slovakia JF832475 JF832617 JF832755 JF832796 JF832552 JF832871
Pleonectria coryli A.R. 4583, CBS 129358 BPI 881053, C.L.L. 651 Corylus avellana France JF832476 JF832672 JF832740 JF832797 JF832553 JF832872
Pleonectria coryli A.R. 2777, CBS 115619 BPI 746347 Viburnum lantana Austria JF832477 JF832618 JF832741 JF832798 JF832554 JF832873
Pleonectria coryli A.R. 4561, CBS 129156, Y.H. 08-15 BPI 880697 Twigs of Rhus copallinum USA HM484509a HM484539a HM484566a HM484581a HM484536a HM484596a
Pleonectria coryli A.R. 4566, CBS 129744, Y.H. 08-20 BPI 881054 Twigs of Celastrus orbiculatus USA JF832478 JF832619 JF832742 JF832799 JF832555 JF832874
Pleonectria cucurbitula CBS 301.75 Pinus nigra France JF832461 JF832621 JF832720 JF832808 JF832563 JF832854
Pleonectria cucurbitula CBS 259.58 Pinus sylvestris Netherlands GQ505974a HM484541a GQ505998a GQ506028a HM484530a HM484592a
Pleonectria cucurbitula CBS 541.70 Dead twig in witch's broom Netherlands JF832463 JF832602 JF832722 JF832809 JF832565 JF832856
Pleonectria cucurbitula A.R. 2778, CBS 125130 BPI 746348 Pinus sylvestris Austria JF832464 JF832603 JF832723 JF832811 JF832564 JF832855
Pleonectria cucurbitula CBS 178.73 Pinus sylvestris Netherlands JF832462 JF832607 JF832733 JF832810 JF832566 JF832857
Pleonectria ilicicola A.R. 4108, CBS 125147 BPI 880698 Ilex aquifolium UK HM484506a HM484538a HM484565a HM484579a HM484522a HM484590a
Pleonectria ilicicola (isolated from ascospore) A.R. 4497, CBS 125170 BPI 881055, C.L.L. 7159 Ilex aquifolium France JF832445 JF832625 JF832756 JF832793 JF832549 JF832843
Pleonectria ilicicola (isolated from conidium) A.R. 4498, CBS 125171 BPI 881055, C.L.L. 7159 Ilex aquifolium France JF832446 JF832626 JF832758 JF832794 JF832550 JF832844
Pleonectria ilicicola A.R. 4574, CBS 128978 BPI 879857, C.L.L. 7184 Ilex aquifolium France JF832447 JF832673 JF832757 JF832795 JF832551 JF832845
Pleonectria lamyi A.R. 2779, CBS 115034 BPI 746349 Berberis vulgaris Austria HM484507a HM484544a HM484569a HM484582a HM484518a HM484593a
Pleonectria lamyi CBS 417.89 Berberis vulgaris Germany JF832516 JF832830 JF832580
Pleonectria okinawensis CBS 129369, MAFF 241410, TPP-h92 BPI 881058, TUA-TPP-h92 Castanopsis sp. Japan JF832451 JF832674 JF832751 JF832827 JF832585 JF832878
Pleonectria okinawensis CBS 129745, TPP-h93 TUA-TPP-h93 Castanopsis sp. Japan JF832452 JF832675 JF832752 JF832828 JF832586 JF832879
Pleonectria pinicola A.R. 4608, CBS 128979 Taiwan JF832746 JF832821 JF832571
Pleonectria pinicola MAFF 241458, TPP-h543 BPI 881061, TUA-TPP-h543 Pinus koraiensis Japan JF832469 JF832676 JF832748 JF832823 JF832572 JF832862
Pleonectria pinicola A.R. 4478, CBS 125166 BPI 881059 Pinus sylvestris Germany HM484508a HM484540a HM484567a HM484580a HM484528a HM484591a
Pleonectria pinicola CBS 242.30 Pinus sylvestris Russia JF832615 JF832747 JF832822 JF832573 JF832863
Pleonectria pinicola A.R. 4479, CBS 125167 BPI 881060 Pinus sylvestris Germany JF832470 JF832616 JF832749 JF832824 JF832574 JF832864
Pleonectria pyrrhochlora A.R. 2786, CBS 125131 BPI 746398 Acer campestre Austria HM484512a HM484545a HM484570a HM484584a HM484519a HM484598a
Pleonectria quercicola A.R. 3805, CBS 128976 BPI 871328 Quercus ilex ssp. rotundifolia (as ssp. ballota) Spain JF832450 JF832624 JF832743 JF832831 JF832581 JF832880
Pleonectria rosellinii MAFF 241403 BPI 881063 Abies sachalinensis Japan JF832670 JF832735 JF832575 JF832865
Pleonectria rosellinii MAFF 241459, NITE 102242 BPI 881062 Dead twigs Japan JF832471 JF832611 JF832736 JF832816 JF832576 JF832866
Pleonectria rosellinii A.R. 3494, CBS 128975 BPI 747280 Abies fraseri USA JF832472 JF832612 JF832737 JF832817 JF832868
Pleonectria rosellinii CBS 129427, Y.H. 10-14i BPI 881065 Abies balsamea USA JF832473 JF832613 JF832738 JF832819 JF832577 JF832869
Pleonectria rosellinii CBS 129162, Y.H. 10-12g BPI 881066 Abies balsamea USA JF832474 JF832614 JF832739 JF832820 JF832578 JF832870
Pleonectria rosellinii CBS 129161, Y.H. 10-09d BPI 881064 Abies balsamea USA JF832671 JF832818 JF832579 JF832867
Pleonectria sinopica A.R. 4669, CBS 128981 C.L.L. 9237 Hedera sp. France JF832448 JF832622 JF832744 JF832825 JF832582 JF832876
Pleonectria sinopica A.R. 4495, CBS 125169 BPI 881067, C.L.L. 7156 Hedera helix France JF832449 JF832620 JF832745 JF832826 JF832583 JF832877
Pleonectria sinopica CBS 462.83 CBS H-19479, CBS H-19485 Hedera helix Netherlands GQ505973a HM484542a GQ506001a GQ506031a HM484531a HM484595a
Pleonectria strobi CBS 102036, G.J.S. 90-45 BPI 1107115 Pinus strobus USA JF832465 JF832604 JF832734 JF832812 JF832567 JF832858
Pleonectria strobi CBS 129363, G.J.S. 91-107 BPI 1112876 Pinus strobus USA JF832468 JF832608 JF832724 JF832815 JF832568 JF832860
Pleonectria strobi CBS 125107, C.T.R. 71-382 NY Pinus strobus USA JF832467 JF832605 JF832725 JF832813 JF832569 JF832861
Pleonectria strobi A.R. 1425, CBS 125122 NY Pinus strobus USA JF832466 JF832606 JF832726 JF832814 JF832570 JF832859
Pleonectria virens A.R. 4558, Y.H. 08-11 BPI 881068, C.L.L. 7181 Twigs France JF832509 JF832677 JF832754 JF832832 JF832589 JF832883
Pleonectria zanthoxyli CBS 129157, Y.H. 09-03 BPI 881069 Dead bark USA JF832510 JF832627 JF832753 JF832833 JF832590 JF832884
Pleonectria zanthoxyli A.R. 4616, CBS 124736 C.L.L. 7132 Crataegus sp. France JF832511 JF832591 JF832885
Pleonectria zanthoxyli A.R. 4280, CBS 126113 BPI 878445 Crataegus sp. France HM484513a HM484546a HM484571a HM484585a HM484523a HM484599a
Pseudonectria pachysandricola A.R. 4592, CBS 128674 BPI 879936 Pachysandra sp. USA JF832512 JF832658 JF832715 JF832791 JF832544 JF832909
Pseudonectria rousseliana A.R. 2716, CBS 114049 Buxus sempervirens Spain U17416a AY489670a
Rodentomyces reticulatus A.R. 4677, DSM 23301, F. Doveri #8348, CBS 128675 Rodent dung Italy JF832480 JF832659 JF832717 JF832543 JF832910
Rugonectria rugulosa CBS 129158, Y.H. 10-01 BPI 881070 Bark USA JF832515 JF832661 JF832761 JF832836 JF832545 JF832911
Thelonectria westlandica CBS 112464, G.J.S. 83-156 Dacrydium cupressinum New Zealand GQ505959a HM484559a GQ505987a GQ506015a HM484533a HM484610a
Verrucostoma freycinetiae MAFF 240100, TPP-h523 BPI 878948 Freycinetia boninensis Japan GQ505984a HM484866a GQ506013a GQ506018a HM484853a HM484885a
Viridispora alata A.R. 1770, CBS 125123 Bark Madeira GQ505985a JF832678 GQ505989a GQ506019a JF832592 JF832912
Viridispora diparietispora ATCC MYA 627 BPI 802202 Crataegus crus-galli USA AY489735a AY489668a

A.R.: Amy Y. Rossman, USDA-ARS MD USA; ATCC: American Type Culture Collection, Manassas, VA, USA; BPI: U.S. National Fungus Collections USDA-ARS MD USA; CBS: Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands; C.L.L.: Christian Lechat, Ascofrance, Villiers en Bois, France.; CMW: represents cultures in the culture collection of the Forestry and Agricultural Biotechnology Institute (FABI), Pretoria, South Africa; C.T.R.: Clark T. Rogerson, The New York Botanical Garden, NY, USA; G.J.S.: Gary J. Samuels, USDA-ARS MD USA; ICMP: ICMP culture collection, Auckland, New Zealand; MAFF: MAFF Genebank, National Institute of Agrobiological Sciences, Ibaraki, Japan; NITE: NBRC, National Institute of Technology and Evaluation, Chiba, Japan; NCSU: The Mycological Herbarium, North Carolina State University, NC, USA; NY: William and Lynda Steere Herbarium, The New York Botanical Garden, NY, USA; PC: Herbier Cryptogamique, Départment de Systématique et Évolution, Muséum National d'Histoire Naturelle, Paris, France; PDD: New Zealand Fungus Herbarium, Auckland, New Zealand; TUA-TPP-h: Yuuri Hirooka, Tropical Plant Protection Lab Herbarium, Tokyo University of Agriculture, Tokyo Japan; TPP-h: Yuuri Hirooka, Tropical Plant Protection Lab Culture Collection, Tokyo University of Agriculture, Tokyo Japan; Y.H.: Yuuri Hirooka, USDA-ARS MD USA.

a

Sequences obtained from GenBank