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. 2011 Oct;17(10):1873–1875. doi: 10.3201/eid1710.101890

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This is a publication of the U.S. Government. This publication is in the public domain and is therefore without copyright. All text from this work may be reprinted freely. Use of these materials should be properly cited.

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Phylogenetic analysis of isolate YY5 (in boldface) from an ill Shaoxing duck in the People’s Republic of China and selected other flaviviruses obtained by using an ≈1-kb nt sequence in the nonstructural 5 genomic region. The tree was constructed by the neighbor-joining method of MEGA (7). Numbers at nodes indicate bootstrap percentages obtained after 1,000 replicates; only bootstrap values >70% are shown. Scale bar indicates genetic distance. The sequences used in the phylogenetic analysis are as follows: AF013374, Gadgets Gully virus (GGYV); AF013385, Kyasanur Forest disease virus (KFDV); M86650, Langat virus (LGTV); Y07863, louping ill virus (LIV); AF013393, Omsk hemorrhagic fever virus (OHFV); L06436, Powassan virus (POWV); AF013398, Royal Farm virus (RFV); U27495, tick-borne encephalitis virus (TBEV); AF013380, Kadam virus (KADV); AF013386, Meaban virus (MEAV); AF013403, Saumarez Reef virus (SREV); AF013410, Tyuleniy virus (TYUV); AF013362, Aroa virus (AROAV); NC_001477, dengue virus 1 (DENV-1); AF013382, Kedougou virus (KEDV); AF013367, Cacipacore virus (CPCV); U15763, Japanese encephalitis virus (JEV); AF013384, Koutango virus (KOUV); AF013360, Alfuy virus (ALFV); AF013389, Murray Valley encephalitis virus (MVEV); AF013416, St. Louis encephalitis virus (SLEV); AF013412, Usutu virus (USUV); M12294, West Nile virus (WNV); D00246, Kunjin virus (KUNV); AF013413, Yaounde virus (YAOV); AF013383, Kokobera virus (KOKV); AF013363, Bagaza virus (BAGV); AF013376, Ilheus virus (ILHV); AF013397, Rocio virus (ROCV); AF013377, Israel turkey meningoencephalomyelitis virus (ITV); AF013392, Ntaya virus (NTAV); AF013408, Tembusu virus strain MM1775 (TMUV-MM1775); AF013409, TMUV strain THCAr (TMUV-THCAr); AB026994, TMUV strain Sitiawan (TMUV-Sitiawan); AF013415, Zika virus (ZIKV); AF013406, Spondweni virus (SPOV); L40951, Banzi virus (BANV); AF013364, Bouboui virus (BOUV); AF013372, Edge Hill virus (EHV); AF013378, Jugra virus (JUGV); AF013400, Saboya virus (SABV); AF013404, Sepik virus (SEPV); AF013411, Uganda S virus (UGSV); EU707555, Wesselsbron virus (WESSV); X03700, yellow fever virus (YFV); AF013373, Entebbe bat virus (ENTV); AF013414, Yokose virus (YOKV); AF013361, Apoi virus (APOIV); AF013370, Cowbone Ridge virus (CRV); AF013379, Jutiapa virus (JUTV); AF013387, Modoc virus (MODV); AF013401, Sal Vieja virus (SVV); AF013402, San Perlita virus (SPV); AF013365, Bukalasa bat virus (BBV); AF013368, Carey Island virus (CIV); AF013371, Dakar bat virus (DBV); AF013388, Montana myotis leukoencephalitis virus (MMLV); AF013394, Phnom Penh bat virus (PPBV); AF013396, Rio Bravo virus (RBV); M91671, cell fusing agent virus (CFAV); NC_003996, Tamana bat virus (TABV); and EU159426, Nounané virus (NOUV). The nucleotide sequence of isolate YY5 used in the phylogenetic analysis has been deposited in GenBank under accession no. HQ641390.