Table 3.
Numeric comparison of ExHap, GERMLINE, and Sweep.
| ExHap | GERMLINE | Sweep | |||
|---|---|---|---|---|---|
| Range in base pairs | Cohort | Percent Congruet | Avg # of Shared Segments per chromosome, 0.75 Mb min length | Avg EHH of 30 Core Haplotypes with Highest EHH at 600 Kb From Core | |
| Chr2 | 135460477-136506753 | CEU | 79.0 | 19.1 | 0.69 |
| YRI | 7.0 | 2.8 | 0.59 | ||
| Chr8 | 99920891-100880665 | CEU | 72.7 | 9.3 | 0.90 |
| YRI | 70.0 | 7.9 | 0.84 | ||
| Chr10 | 103101047-104210566 | CEU | 9.1 | 4.5 | 0.51 |
| YRI | 44.5 | 3.0 | 0.70 | ||
Three regions were selected based on patterns of congruence in HapMap CEU and YRI cohorts. Allele identity plots of the regions are presented in Figures 5, 6, and 7. GERMLINE results are expressed as average number of shared segments per chromosome to account for the difference in the number of chromosomes between CEU (n = 176) and YRI (n = 200)