Table 2. Primers and probes employed for genotyping three promoter SNPs in the FCN2 gene.
Position | Primer/Probe | Sequence |
−986G>A | Primers | 5′-tgatcttgccaaggaagaaggc-3′ |
5′- ccactaccaccaccgca -3′ | ||
Probes | 5′-YAK-acctgccgccatcgg- BBQ3 | |
5′ -FAM-acctgctgccatcggga- BBQ3′ | ||
−602G>A | Primers | 5′-tccccactcttctctcctttcc-3′ |
5′-cctggggcagtatgtagagca-3′ | ||
Probes | 5′-YAK-tcctgttcgtgtgcccc-BBQ3′ | |
5′-FAM-tcctgttcatgtgcccctg-BBQ3′ | ||
−4A>G | Primers | 5′- aagatgagaaattggagtctgaggga- 3′ |
5′-gaaagagagcagcagggtgg-3′ | ||
Probes | 5′-YAK- ctccatctcctctggtctttgctt - BBQ3′ | |
5′-FAM- agctccatctcttctggtctttgc - BBQ3′ |
YAK and FAM are the reporter fluorophores Yakima Yellow and Fluorescein, respectively.
Each probe carries at the 3′-end the dark BBQ (BlackBerry Quencher).