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LD blocks are marked with triangles. Values in boxes are LD (r2) between SNP pairs and the boxes are coloured according to the standard Haploview colour scheme: LOD>2 and D′ = 1, red; LOD>2 and D′<1, shades of pink/red; LOD<2 and D′ = 1, blue; LOD<2 and D′<1, white (LOD is the log of the likelihood odds ratio, a measure of confidence in the value of D′).
