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. 2012 Mar 23;7(3):e33549. doi: 10.1371/journal.pone.0033549

Table 2. The summary of the results in GWAS, replication and combined datasets.

			GWA¹						Replication²				Combined³
Chromosome	SNP	Position	F_A⁴	F_U⁵	P_raw	P_GC	P_genome	OR	F_A⁴	F_U⁵	P_raw	OR	F_A⁴	F_U⁵	P_raw	OR
3	BICF2P397912	82766251	0.60	0.33	3.91E-4	0.001	0.96	3.11	0.49	0.40	0.14	1.41	0.51	0.39	0.014	1.65
4	TIGRP2P58276	13088720	0.43	0.16	1.39E-4	5.25E-4	0.76	3.91	0.39	0.29	0.07	1.55	0.40	0.26	0.004	1.86
9	BICF2P1288768	18597315	0.43	0.47	4.71E-4	0.001	0.98	0.31	0.43	0.47	0.53	0.86	0.38	0.47	0.078	0.69
18	TIGRP2P239410	15846321	0.15	0.47	1.68E-5	8.95E-5	0.18	0.21	0.30	0.39	0.10	0.67	0.27	0.43	0.001	0.49
23	BICF2G630382382	22138085	0.20	0.48	1.60E-4	5.91E-4	0.79	0.27	0.25	0.31	0.22	0.73	0.24	0.37	0.005	0.53
37	BICF2P890779	18123961	0.53	0.18	1.34E-6	1.09E-5	0.02	5.41	0.72	0.50	3.72E-05	2.59	0.76	0.49	9.70E-10	3.29

¹

GWAS dataset: 40 cases, 44 controls.

²

Replication dataset: chromosomes 3, 4, 9, 18, 23: 54 cases, 62 controls; chromosome 37: 81 cases, 88 controls.

³

Combined dataset: chromosomes 3, 4, 9, 18, 23: 94 cases, 106 controls; chromosome 37: 116 cases, 130 controls.

⁴

Frequency of the minor allele (based on GWAS controls) in affected individuals.

⁵

Frequency of the minor allele (based on GWAS controls) in unaffected individuals.