Table 2. Genes highly expressed in the Longissimus muscle of Basque pigs (n = 20).
| Symbola | Description | FCb | P-valuec | Associated GO BP termsd |
| FOS | FBJ murine osteosarcoma viral oncogene | 2.6 | 2.9E-02 | Inflammatory response (6954), Response to oxidative stress(6979), Aging (7568), Learning (7612), Feeding behaviour (7631), Response to endogenous stimulus (9719), Response to extracellular stimulus (9991), Regulation of transcription (45449) |
| CPEB2 | Cytoplasmic polyadenylation element binding protein 2 | 2.6 | 2.4E-06 | Regulation of translation (6417) |
| BVES | Blood vessel epicardial substance | 2.6 | 1.9E-07 | Muscle organ development (7517) |
| PLA1A | Phospholipase A1 member A | 2.6 | 3.1E-10 | Lipid catabolic process (16042) |
| ZNF410 | Zinc finger protein 410 | 2.4 | 2.4E-06 | Transcription (6350) |
| KRT7 | Keratin, type II cytoskeletal 7 | 2.3 | 4.1E-04 | DNA replication (6260), Regulation of translation (6417), Cytoskeleton organization (7010), Cell cycle (7049) |
| FNTB | Protein farnesyltransferase subunit beta | 2.3 | 9.2E-08 | Response to wounding (9611), Regulation of cell proliferation (42127), Lipoprotein metabolic process (42157), Lipoprotein biosynthetic process (42158), Regulation of fibroblast proliferation (48145) |
| NHEDC2 | Mitochondrial sodium/hydrogen exchanger NHA2 | 2.2 | 2.2E-03 | Ion transport (6811) |
| FBXO32 | F-box only protein 32 | 2.2 | 1.5E-04 | Proteolysis (6508) |
| KCNMA1 | Potassium large conductance calcium-activated channel, subfamily M, alpha member 1 | 2.2 | 1.5E-09 | Cation homeostasis (55080), Response to hypoxia (1666), Muscle system process (3012), Circulatory system process (3013) |
| SH3KBP1 | SH3-domain kinase binding protein 1 | 2.2 | 5.5E-04 | Endocytosis (6897), Apoptosis (6915), Cell-cell signalling (7267) |
| SMPDL3A | Sphingomyelin phosphodiesterase, acid-like 3A | 2.1 | 2.5E-02 | Membrane lipid metabolic process (6643) |
| LIPE | Lipase, hormone-sensitive | 2.1 | 1.1E-04 | Protein amino acid phosphorylation (6468), Triglyceride metabolic process (6641) |
| MON1A | Vacuolar fusion protein MON1 homolog A | 2.1 | 4.4E-10 | Cellular ion homeostasis (6873), Protein secretion (9306) |
| ZNF24 | Zinc finger protein 24 | 2.1 | 6.4E-11 | Transcription (6350) |
a
Only genes with at least one associated GO BP term are presented in the Table.
b
Fold Change value is expressed as the expression ratio of Basque to Large White samples.
c
Benjamini and Hochberg adjusted P value.
d
Gene Ontology identification numbers are shown in brackets.