Table 2. Genotype distributions of 4 SNPs in COL18A1 gene of the 302_Beijing samples.
Allele, n (%) | Genotype, n (%) | Cochran Armitage trend test | logistic regression# | ||||||
1/2 | 1 | 2 | P/OR (95% CI) | 11 | 12 | 22 | P | P/OR (95% CI) | |
rs2183589 | C/T | ||||||||
HCC (n = 169) | 306 (90.5%) | 32 (9.5%) | 0.18 | 139 (82.2%) | 28 (16.6%) | 2 (1.2%) | 0.18 | 0.20 | |
CHB (n = 203) | 355 (87.4%) | 51 (12.6%) | 1.37 (0.86–2.19) | 155 (76.4%) | 45 (22.2%) | 3 (1.5%) | 1.37 (0.85–2.22) | ||
rs2230688 | G/T | ||||||||
HCC (n = 169) | 223 (66.0%) | 115 (34.0%) | 0.43 | 72 (42.6%) | 79 (46.7%) | 18 (10.7%) | 0.43 | 0.41 | |
CHB (n = 203) | 279 (68.7%) | 127 (31.3%) | 0.88 (0.65–1.20) | 99 (48.8%) | 81 (39.9%) | 23 (11.3%) | 0.88 (0.64–1.20) | ||
rs11702425 | T/C | ||||||||
HCC (n = 169) | 262 (77.5%) | 76 (22.5%) | 0.98 | 104 (61.5%) | 54 (32.0%) | 11 (6.5%) | 0.98 | 0.73 | |
CHB (n = 203) | 315 (77.6%) | 91 (22.4%) | 0.99 (0.70–1.41) | 127 (62.6%) | 61 (30.0%) | 15 (7.4%) | 0.94 (0.67–1.32) | ||
rs7499 | C/T | ||||||||
HCC (n = 169) | 153 (45.3%) | 185 (54.7%) | 0.006 | 29 (17.2%) | 95 (56.2%) | 45 (26.6%) | 0.005 | 0.009 | |
CHB (n = 203) | 225 (55.4%) | 181 (44.6%) | 0.67 (0.50–0.89) | 63 (31.0%) | 99 (48.8%) | 41 (20.2%) | 0.66 (0.48–0.90) |
P values were adjusted for age, gender, smoking and drinking by binary logistic regression.