Table 2. Results of cross-validation experiment under the epistatic genetic model for the barley kernel weight trait using the PML, eBayes, BSPML and LASSO methods.
Method | Mean prediction error | R2a | r2b |
---|---|---|---|
PML | 3.034 | 0.3557 | 0.4886 |
eBayes | 2.657 | 0.4356 | 0.5075 |
BSPML | 2.269 | 0.5182 | 0.5359 |
LASSO | 2.229 | 0.5265 | 0.5402 |
Abbreviations: BSPML, bias-correction and shrinkage penalized maximum likelihood; LASSO, least absolute shrinkage and selection operator; MPE, mean prediction error; PML, penalized maximum likelihood.
R2=1−MPE/mean squared deviation, where and
Pearson's correlation coefficient squared.