Table 3. Parameter estimates from phylogenetic analyses.
Parameter | Maximum likelihood | Mean (MrBayes) | 95% credible interval |
−Ln(likelihood) | 4947.80616 | 5126.72 | |
Base frequencies: | |||
A | 0.308362 | 0.304453 | 0.28376–0.325386 |
C | 0.306745 | 0.313918 | 0.294273–0.333866 |
G | 0.10933 | 0.10606 | 0.092488–0.120346 |
T | 0.275564 | 0.275569 | 0.257436–0.294444 |
Rate matrix R: | |||
AC | 1.54978 | 0.070678 | 0.051396–0.091749 |
AG | 4.54285 | 0.283505 | 0.23189–0.338771 |
AT | 1.54978 | 0.114535 | 0.089641–0.143007 |
CG | 1 | 0.053364 | 0.027305–0.086909 |
CT | 6.3631 | 0.387983 | 0.339399–0.438247 |
GT | 1 | 0.089936 | 0.052845–0.135436 |
Relative Site Rates: | |||
Cyt b position1 | 0.39758 | 0.383505 | 0.300655–0.477924 |
Cyt b position 2 | 0.11616 | 0.114631 | 0.074023–0.163621 |
Cyt b position 3 | 2.59399 | 2.645424 | 2.474685–2.813977 |
Cont. Region | 0.90202 | 0.868631 | 0.741192–1.002187 |