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. 2012 Mar 28;7(3):e34366. doi: 10.1371/journal.pone.0034366

Table 1. Sequence, Tm and references of primers used.

PRIMERS 5′-3′ SEQUENCES Bp Tm(C°) reference
MY09 CGTCCMARRGGAVVACTGATC ∼450 50 Manos et al 1989
MY11 GCMCAGGGVVCATAAYAATGG 52
GH20 GAAGAGCCAAGGACAGGTAC 260 62 Saiki et al 1988
PC04 CAACTTCATCCACGTTCA CC 60
16E6-S 26 AAGGGCGTAACCGAAATCGGT 207 64 Nagao et al 2002
16E6-AS 233 CATATACCTCACGTCGCAG 58
16E2-S 3383 TTATTAGGCAGCACTTGGCCA 177 62 Nagao et al 2002
16E2-AS 3560 GTGAGGATTGGAGCACTGTCC 64
16E2-S 2734 AGGACGAGGACAAGGAAAA 1139 56 Yoshinouchi et al 1999
16E2-AS 3846 GGA TGC AGT ATC AAG ATT TG 56

Names of HPV16 primers include sense of primer extension followed by the position of the 5′ nt on prototype sequence for rapid primer location.