Table 1. Sequence, Tm and references of primers used.
PRIMERS | 5′-3′ SEQUENCES | Bp | Tm(C°) | reference |
MY09 | CGTCCMARRGGAVVACTGATC | ∼450 | 50 | Manos et al 1989 |
MY11 | GCMCAGGGVVCATAAYAATGG | 52 | ||
GH20 | GAAGAGCCAAGGACAGGTAC | 260 | 62 | Saiki et al 1988 |
PC04 | CAACTTCATCCACGTTCA CC | 60 | ||
16E6-S 26 | AAGGGCGTAACCGAAATCGGT | 207 | 64 | Nagao et al 2002 |
16E6-AS 233 | CATATACCTCACGTCGCAG | 58 | ||
16E2-S 3383 | TTATTAGGCAGCACTTGGCCA | 177 | 62 | Nagao et al 2002 |
16E2-AS 3560 | GTGAGGATTGGAGCACTGTCC | 64 | ||
16E2-S 2734 | AGGACGAGGACAAGGAAAA | 1139 | 56 | Yoshinouchi et al 1999 |
16E2-AS 3846 | GGA TGC AGT ATC AAG ATT TG | 56 |
Names of HPV16 primers include sense of primer extension followed by the position of the 5′ nt on prototype sequence for rapid primer location.