Table 6. Replication and pooled analysis: SNP association with ALS survival.
Discovery analysis | Replication analysis | Pooled analysis | |||||||
Chr | SNP | pos (build 36) | Closest gene (distance) | Hazard ratio (95% CI) | P | Hazard ratio (95% CI) | p | Hazard ratio (95% CI) | p |
4 | rs6840169 | 83637534 | TMEM150C | 1.5 (1.2, 1.7) | 7.8E-06 | 1.2 (0.8, 1.9) | 0.40 | 1.4 (1.2, 1.6) | 3.9E-05 |
6 | rs564053 | 94874715 | TSG1 (332 kb) | 1.4 (1.2, 1.7) | 9.6E-06 | 1.1 (0.7, 1.6) | 0.62 | 1.4 (1.2, 1.6) | 5.5E-05 |
15 | rs873961 | 59135496 | RORA | 0.7 (0.6, 0.8) | 1.4E-05 | 1.2 (0.9, 1.6) | 0.31 | 0.8 (0.7, 0.9) | 7.2E-05 |
15 | rs11632352 | 59145158 | RORA | 0.7 (0.6, 0.9) | 3.2E-05 | 1.1 (0.8, 1.5) | 0.63 | 0.8 (0.7, 0.9) | 7.5E-05 |
6 | rs7764218 | 162854134 | PARK2 | 0.5 (0.4, 0.7) | 8.6E-06 | 1.1 (0.7, 1.8) | 0.65 | 0.6 (0.5, 0.8) | 1.5E-04 |
6 | rs7757630 | 162860228 | PARK2 | 0.5 (0.4, 0.7) | 7.9E-06 | 1.1 (0.7, 1.7) | 0.72 | 0.6 (0.5, 0.8) | 1.5E-04 |
15 | rs8037669 | 59137212 | RORA | 0.7 (0.6, 0.8) | 1.7E-05 | 1.3 (0.9, 1.9) | 0.11 | 0.8 (0.7, 0.9) | 1.6E-04 |
6 | rs7740421 | 162890461 | PARK2 | 0.5 (0.4, 0.7) | 7.4E-06 | 1.2 (0.7, 2) | 0.56 | 0.6 (0.5, 0.8) | 2.5E-04 |
20 | rs6027005 | 57632613 | PHACTR3 | 1.7 (1.3, 2.3) | 2.0E-04 | 0.8 (0.2, 3.3) | 0.75 | 1.7 (1.3, 2.2) | 4.1E-04 |
6 | rs6904956 | 162865529 | PARK2 | 0.5 (0.4, 0.7) | 9.5E-06 | 0.9 (0.7, 1.4) | 0.76 | 0.7 (0.5, 0.8) | 5.1E-04 |