Table 7. Pooled analysis: ALS outcome association with genes implicated by previous GWA studies.
Pooled analysis (without WTCCC2 controls) | Pooled analysis (with WTCCC2 controls) | ||||||
Chr | SNP | pos (build 36) | Gene | OR (95% CI) | P | OR (95% CI) | p |
9 | rs3849942* | 27543281 | 9p21.2 | 1.1 (0.9, 1.3) | 0.17 | 1.1 (0.9, 1.2) | 0.46 |
7 | rs17174381 | 153709165 | DPP6 | 2.1 (1.3, 3.5) | 0.0051 | 1.9 (1.3, 2.8) | 4.4E-04 |
7 | rs10260404* | 153841731 | DPP6 | 1.1 (0.9, 1.2) | 0.47 | 1.0 (0.9, 1.1) | 0.97 |
8 | rs6985069 | 28142007 | ELP3 | 0.7 (0.6, 0.9) | 2.7E-04 | 0.8 (0.7, 0.9) | 4.8E-04 |
8 | rs13268953* | 28111155 | ELP3 | 1.0 (0.8, 1.1) | 0.83 | 1.0 (0.9, 1.1) | 0.97 |
12 | rs11048556 | 26559935 | ITPR2 | 1.3 (0.9, 1.7) | 0.14 | 1.4 (1.1, 1.9) | 0.0068 |
12 | rs2306677* | 26527653 | ITPR2 | 1.0 (0.7, 1.3) | 0.84 | 0.9 (0.7, 1.1) | 0.25 |
19 | rs3746200 | 17573374 | UNC13A | 0.8 (0.6, 1.0) | 0.050 | 0.7 (0.6, 0.9) | 0.0068 |
19 | rs12608932* + | 17613689 | UNC13A | 1.2 (1.0, 1.5) | 0.039 | 1.2 (1.0, 1.4) | 0.046 |
*Associated SNPs from previous GWAS.
Results from discovery phase only (SNP failed in replication).