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Comparison of the number of probes, probe sets used and genes represented in Affymetrix and Brainarray custom CDF files
| Array | CDF | Probes | Probe sets | Genes |
|---|---|---|---|---|
| Human U133 Plus 2.0 | Affymetrix | 604 258 | 54 675 | 19 798 |
| Custom | 277 789 | 19 008 | 18 974 | |
| Human U133A | Affymetrix | 247 965 | 22 283 | 12 718 |
| Custom | 167 345 | 12 078 | 12 065 | |
| Mouse 430 2.0 | Affymetrix | 496 468 | 45 101 | 20 757 |
| Custom | 240 917 | 17 306 | 17 289 |
