Table I. Protein identifications in eleven cell lines. Summary of the number of identified proteins from triplicate analysis of each cell line. Using the “match between runs” option in MaxQuant enabled transfer of identification between LC MS/MS runs based on retention time and accurate mass and therefore increased the number of identifications per cell line.
| Cell line | Origin | Identified proteins |
|
|---|---|---|---|
| Triplicate analyses | ‘Match between runs’ | ||
| A549 | Lung carcinoma | 8008 | 10,432 |
| GAMG | Glioblastoma | 8292 | 10,503 |
| HEK293 | Embryonic kidney cells | 8543 | 10,504 |
| Hela | Cervical carcinoma | 7781 | 10,371 |
| HepG2 | Hepatoma | 7131 | 10,204 |
| Jurkat | Acute T-Cell Leukemia | 7804 | 10,443 |
| K562 | Chronic Myeloid Leukemia | 7395 | 10,156 |
| LnCap | Prostate carcinoma | 7630 | 10,369 |
| MCF7 | Mammary carcinoma | 7836 | 10,411 |
| RKO | Colon carcinoma | 7336 | 10,252 |
| U2OS | Osteosarcoma | 8025 | 10,402 |